Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19610_001 | Banana | nucleus | 64.17 | 86.9 |
| GSMUA_Achr6P01800_001 | Banana | nucleus | 62.94 | 85.4 |
| GSMUA_Achr5P22670_001 | Banana | endoplasmic reticulum, golgi | 47.14 | 75.88 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 4.5 | 67.35 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 53.13 | 66.55 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 62.67 | 62.59 |
| KRH62750 | Soybean | nucleus | 57.77 | 59.63 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 15.67 | 59.59 |
| KRH56284 | Soybean | endoplasmic reticulum | 57.9 | 59.52 |
| AT2G27100.1 | Thale cress | nucleus | 58.31 | 59.44 |
| CDX77068 | Canola | nucleus | 55.86 | 59.42 |
| Bra034322.1-P | Field mustard | nucleus | 55.31 | 58.67 |
| KRH44717 | Soybean | nucleus | 57.08 | 58.44 |
| CDX71472 | Canola | nucleus | 55.04 | 57.47 |
| CDY04478 | Canola | nucleus | 55.04 | 56.9 |
| Bra012034.1-P | Field mustard | nucleus | 54.9 | 56.76 |
| Solyc01g009090.2.1 | Tomato | nucleus | 57.49 | 56.42 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P30900_001 | EnsemblPlants:GSMUA_Achr10T30900_001 | EnsemblPlantsGene:GSMUA_Achr10G30900_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Arsenite-R_2 | InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 |
| PFAM:PF04959 | PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI0002961B94 | UniProt:M0RMW4 |
| MapMan:15.5.15 | MapMan:16.10.2.1.3 | : | : | : | : |
Description
Serrate RNA effector molecule [Source:GMGC_GENE;Acc:GSMUA_Achr10G30900_001]
Coordinates
chr10:-:33101021..33112043
Molecular Weight (calculated)
82399.6 Da
IEP (calculated)
7.679
GRAVY (calculated)
-1.156
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVIDMPTE ALDRRRDLQP ERRENAGGGS SSPPPPPKRK DRDSSERRDD WPSSRTVDQH DSRNRSPPPP PPPLLGQPRD DRDRDYRRRS SPSSPSYRDR
101: RHSPPRRSPP PGPFKRARRD DGGYDRRRGG YNDRRHGYDY GGGYDRDGSG SRGGYGYERP HGRYMNRQAD WPNSGYSGYG DGPEVIPRGG LMSYKQFIQE
201: LEDDISPAEA ERRYEEYRSE YISTQKRAYF EAHKEEQWLK DKYHPTNLVA VIERRKEQAR TVAKEFLLDL QSGTLDLGPG LTPSLASKSG NDSEPNSEDE
301: ADPHGERRRH GRGNAKGHDL LSAAPKSHPV SSEPRRIQVD IEQAQALVHK LDMEKGIQDN VLSYSGHDKL DAEKSHGGSM GPIVIIRGPT TVKGLEGVEL
401: LDTLITYLWR VHGLDYYGMS ETSEAKGLRH VRADNKTHDG TNASGSNWEK KLDIFWQARL EGQDPLETLT AKDKIDAAAT EALDPLVRKI RDEKYGWKYG
501: CGAKGCTKLF HAPEFVHKHL RLKHPDLVME LTSKVREELY FQNYMNDPNA PGGTPVMQQS APKVKSQRRG PPLGNRLRDE RGYRRESDRN DRDDNRHDKT
601: DNSPRDANDG LEGDDNEKPL HEAYGGQGLH GAFPSDVPPP PVLMPVPGAG PLGPFVPAPP DVAMRMLRET GGPSSYEATA GSRGRTGRLG PQVSGPAPIL
701: SMPPAFRHDP RRIRSYQDLD APDDEVTVID YRSL
101: RHSPPRRSPP PGPFKRARRD DGGYDRRRGG YNDRRHGYDY GGGYDRDGSG SRGGYGYERP HGRYMNRQAD WPNSGYSGYG DGPEVIPRGG LMSYKQFIQE
201: LEDDISPAEA ERRYEEYRSE YISTQKRAYF EAHKEEQWLK DKYHPTNLVA VIERRKEQAR TVAKEFLLDL QSGTLDLGPG LTPSLASKSG NDSEPNSEDE
301: ADPHGERRRH GRGNAKGHDL LSAAPKSHPV SSEPRRIQVD IEQAQALVHK LDMEKGIQDN VLSYSGHDKL DAEKSHGGSM GPIVIIRGPT TVKGLEGVEL
401: LDTLITYLWR VHGLDYYGMS ETSEAKGLRH VRADNKTHDG TNASGSNWEK KLDIFWQARL EGQDPLETLT AKDKIDAAAT EALDPLVRKI RDEKYGWKYG
501: CGAKGCTKLF HAPEFVHKHL RLKHPDLVME LTSKVREELY FQNYMNDPNA PGGTPVMQQS APKVKSQRRG PPLGNRLRDE RGYRRESDRN DRDDNRHDKT
601: DNSPRDANDG LEGDDNEKPL HEAYGGQGLH GAFPSDVPPP PVLMPVPGAG PLGPFVPAPP DVAMRMLRET GGPSSYEATA GSRGRTGRLG PQVSGPAPIL
701: SMPPAFRHDP RRIRSYQDLD APDDEVTVID YRSL
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.