Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029743_P001 | Maize | cytosol | 10.43 | 86.09 |
| GSMUA_Achr11P... | Banana | nucleus | 80.4 | 82.31 |
| GSMUA_Achr11P... | Banana | cytosol | 3.16 | 76.92 |
| GSMUA_Achr11P... | Banana | extracellular | 12.43 | 64.48 |
| Os02t0639000-01 | Rice | cytosol | 61.54 | 62.13 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 60.8 | 61.91 |
| EES05486 | Sorghum | cytosol | 59.75 | 60.71 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 59.96 | 60.47 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 59.96 | 60.4 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 59.75 | 60.19 |
| Zm00001d017373_P001 | Maize | nucleus | 59.96 | 59.15 |
| KXG26770 | Sorghum | nucleus | 58.38 | 58.81 |
| PGSC0003DMT400057635 | Potato | nucleus | 54.16 | 58.34 |
| Os04t0529500-02 | Rice | extracellular | 57.22 | 58.2 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 54.16 | 57.69 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 47.73 | 57.49 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 56.59 | 57.31 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 57.22 | 57.28 |
| Solyc02g078550.2.1 | Tomato | nucleus | 57.32 | 57.02 |
| KRH50009 | Soybean | nucleus | 57.43 | 57.01 |
| KRH20483 | Soybean | nucleus | 56.9 | 56.25 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 55.43 | 55.43 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 55.22 | 55.27 |
| KRH10835 | Soybean | nucleus | 55.43 | 54.91 |
| KRH21480 | Soybean | nucleus | 54.79 | 54.17 |
| CDY31421 | Canola | cytosol | 44.89 | 50.84 |
| Bra020905.1-P | Field mustard | cytosol | 45.21 | 50.65 |
| CDX76438 | Canola | cytosol | 45.1 | 50.53 |
| AT4G21670.1 | Thale cress | nucleus | 51.42 | 50.47 |
| Bra038764.1-P | Field mustard | nucleus | 50.05 | 50.16 |
| CDX94046 | Canola | nucleus | 50.16 | 50.05 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 8.43 | 50.0 |
| CDX98696 | Canola | nucleus | 49.0 | 49.89 |
| GSMUA_Achr10P... | Banana | cytosol | 30.56 | 48.17 |
| CDX79083 | Canola | nucleus | 43.52 | 48.08 |
| Bra013546.1-P | Field mustard | nucleus | 42.04 | 45.44 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | InterPro:FCP1_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0070940 | EnsemblPlantsGene:GSMUA_Achr8G14120_001 | EnsemblPlants:GSMUA_Achr8P14120_001 | EnsemblPlants:GSMUA_Achr8T14120_001 | InterPro:HAD-like_sf | InterPro:IPR004274 |
| InterPro:IPR014720 | UniProt:M0TQB5 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 |
| PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 |
| UniParc:UPI0002959802 | InterPro:dsRBD_dom | SEG:seg | : | : | : |
Description
RNA polymerase II C-terminal domain phosphatase-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G14120_001]
Coordinates
chr8:-:10712051..10726404
Molecular Weight (calculated)
105993.0 Da
IEP (calculated)
6.857
GRAVY (calculated)
-0.470
Length
949 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNSAVYYEN SLVGEVEVYP QNPNTGSWLR EIRISHLSPS SERCPPLAIL HTVASGVVRF KMESKSPLSK DSPMSSLHAT LFSENKTAVI ALGEEELHLV
101: AMASRKNPMP YACFWGFSVL SRLYESSLLM LNLRCLGIVF DLDETLLVAN TMRSFEDRID ALQRKISNET DPLRIAGMLT EIKRYQDDKS ILKQYAENDQ
201: VVENGKVFKV QSEMVPPLSD NHQLITRPVI RIQEKSIILT RVNPSIRDTS VLVRLRPAWE DLRSYLTARG RKRFEVYVCT MAERDYALEM WRLLDPDSSL
301: INSSKLLDRI VCVKSGSRKS LLNVFQDGIC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYAPQAEAN STIPVLCVAR NVACNVRGGF FKDFDEGILP
401: RISEVLYEDE MKDFPPAPDV GNFLISEDDA LTANANKDQV CLDGMEDAEV GKRLKEASCS MQAVQPMVTN FGPRPVSSLQ NVPSSFNTTS LTAMRMAVPL
501: PNNQCAQSVP VGRPLGQLAS PEPSFQGSPA REEGEVPESE LDPDTRRRLL ILQHGQDTRE PTPSFPVSPP LRVSIPPVQP QGSWFPLEEE IDPRQQDSAP
601: KEFSREPDPG RYRKRSRHPS FMHGGENSVP SDRVLHEPRR LPIQLRNGGD RLQLNNSLSN FNSFQGEEMP MGRNFSRHKD AQLEPKQATI KQAGSPPGVL
701: QEIAIKCRNK VEFRSTLCDT AELQFSIEVW FVGEKVGEGV GKTRKEAQHR AADMSLRNLA DKYLSNALGG PNTVHGDLLK LPQTKEMGLL SDSNSYGYQP
801: CPRNDLLPVA STSEDSRSMD QRLESSRRTS ATTSLKELCV MEGFDLVFRA EPSPSNGSIS KGEVSAQVEI ARQILGRGVG MSWEDAKLQA AEEALGTLRS
901: MLGQYSQKHS SSPGSLSMMS NKRFKPEVSH ILHRIPPSGR YSKSETPVP
101: AMASRKNPMP YACFWGFSVL SRLYESSLLM LNLRCLGIVF DLDETLLVAN TMRSFEDRID ALQRKISNET DPLRIAGMLT EIKRYQDDKS ILKQYAENDQ
201: VVENGKVFKV QSEMVPPLSD NHQLITRPVI RIQEKSIILT RVNPSIRDTS VLVRLRPAWE DLRSYLTARG RKRFEVYVCT MAERDYALEM WRLLDPDSSL
301: INSSKLLDRI VCVKSGSRKS LLNVFQDGIC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYAPQAEAN STIPVLCVAR NVACNVRGGF FKDFDEGILP
401: RISEVLYEDE MKDFPPAPDV GNFLISEDDA LTANANKDQV CLDGMEDAEV GKRLKEASCS MQAVQPMVTN FGPRPVSSLQ NVPSSFNTTS LTAMRMAVPL
501: PNNQCAQSVP VGRPLGQLAS PEPSFQGSPA REEGEVPESE LDPDTRRRLL ILQHGQDTRE PTPSFPVSPP LRVSIPPVQP QGSWFPLEEE IDPRQQDSAP
601: KEFSREPDPG RYRKRSRHPS FMHGGENSVP SDRVLHEPRR LPIQLRNGGD RLQLNNSLSN FNSFQGEEMP MGRNFSRHKD AQLEPKQATI KQAGSPPGVL
701: QEIAIKCRNK VEFRSTLCDT AELQFSIEVW FVGEKVGEGV GKTRKEAQHR AADMSLRNLA DKYLSNALGG PNTVHGDLLK LPQTKEMGLL SDSNSYGYQP
801: CPRNDLLPVA STSEDSRSMD QRLESSRRTS ATTSLKELCV MEGFDLVFRA EPSPSNGSIS KGEVSAQVEI ARQILGRGVG MSWEDAKLQA AEEALGTLRS
901: MLGQYSQKHS SSPGSLSMMS NKRFKPEVSH ILHRIPPSGR YSKSETPVP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.