Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50009 | Soybean | nucleus | 95.52 | 95.92 |
| Zm00001d029743_P001 | Maize | cytosol | 10.1 | 84.35 |
| KRH10835 | Soybean | nucleus | 76.35 | 76.51 |
| KRH21480 | Soybean | nucleus | 75.62 | 75.62 |
| GSMUA_Achr11P... | Banana | cytosol | 2.81 | 69.23 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 54.17 | 65.99 |
| PGSC0003DMT400057635 | Potato | nucleus | 58.75 | 64.02 |
| Solyc02g078550.2.1 | Tomato | nucleus | 63.02 | 63.42 |
| Bra020905.1-P | Field mustard | cytosol | 51.98 | 58.91 |
| CDX94046 | Canola | nucleus | 57.71 | 58.25 |
| CDX76438 | Canola | cytosol | 51.35 | 58.21 |
| AT4G21670.1 | Thale cress | nucleus | 58.44 | 58.01 |
| CDY31421 | Canola | cytosol | 50.52 | 57.88 |
| Bra038764.1-P | Field mustard | nucleus | 56.88 | 57.66 |
| CDX98696 | Canola | nucleus | 55.83 | 57.51 |
| GSMUA_Achr11P... | Banana | nucleus | 55.1 | 57.07 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 56.25 | 56.9 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 54.17 | 55.79 |
| EES05486 | Sorghum | cytosol | 53.75 | 55.25 |
| GSMUA_Achr11P... | Banana | extracellular | 10.52 | 55.19 |
| Os02t0639000-01 | Rice | cytosol | 53.96 | 55.11 |
| CDX79083 | Canola | nucleus | 49.17 | 54.95 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 53.65 | 54.67 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 53.54 | 54.62 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 53.54 | 54.56 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 53.44 | 54.11 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 50.0 | 53.87 |
| KXG26770 | Sorghum | nucleus | 52.19 | 53.18 |
| Os04t0529500-02 | Rice | extracellular | 51.56 | 53.05 |
| Zm00001d017373_P001 | Maize | nucleus | 52.4 | 52.29 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 51.56 | 52.16 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 51.46 | 52.11 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 50.73 | 51.97 |
| Bra013546.1-P | Field mustard | nucleus | 47.19 | 51.59 |
| KRH49327 | Soybean | nucleus | 38.96 | 44.58 |
| KRH00194 | Soybean | nucleus | 38.54 | 43.89 |
Protein Annotations
| EntrezGene:100789209 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | EMBL:ACUP02008268 | InterPro:FCP1_dom |
| EnsemblPlantsGene:GLYMA_13G181700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016591 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf | UniProt:I1M0C8 |
| InterPro:IPR004274 | InterPro:IPR014720 | EnsemblPlants:KRH20483 | ProteinID:KRH20483 | ProteinID:KRH20483.1 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
| SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000233B940 | InterPro:dsRBD_dom | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:-:29486277..29495256
Molecular Weight (calculated)
107105.0 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.469
Length
960 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKSVVYQGE VVVGEVDVYP EENNNNNNKN YNKNFHVKEI RISHFSQPSE RCPPLAVLHT VTSCGVCFKM ESKTQQQDGL FQLHSLCIRE NKTAVMPLGG
101: EEIHLVAMHS RNDDRPCFWG FIVTLGLYDS CLVMLNLRCL GIVFDLDETL IVANTMRSFE DRIDALQRKI NSEVDPQRIS GMQAEVKRYL DDKNILKQYA
201: ENDQVVDNGR VIKVQSEIVP ALSDSHQPIV RPLIRLQDKN IILTRINPQI RDTSVLVRLR PAWEDLRSYL TARGRKRFEV YVCTMAERDY ALEMWRLLDP
301: DSNLINSKEL LGRIVCVKSG LKKSLFNVFQ DGSCDPKMAL VIDDRLKVWD ERDQPRVHVV PAFAPYYAPQ AEASNTIPVL CVARNVACNV RGGFFKDFDD
401: GLLQKIPQIA YEDDIKDVPS PPDVSNYLVS EDDGSISNGN RDPFLFDGMA DAEVERKLKD ALAAASTFPV TTANLDPRLT SLQYTMVPSG SVPPPTAQAS
501: MMPFPHVQFP QPATLVKPMG QAAPSDPSLH SSPAREEGEV PESELDPDTR RRLLILQHGQ DTRDHASAEP PFPVRHPVQA SAPRVPSSRG VWFPVEEEIG
601: SQPLNRVVPK EFPVDSGPLG IEKPRLHHPS FFNKVESSIS SDRILHDSHQ RLPKEMYHRD DRPRLNHMLS SYRSFSGDDI PFSRSSSSHR DLDSESGHSV
701: LHADTPVAVL HEIALKCGTK VDFMSSLVAS TELKFSLEAW FSGKKIGHGF GRTRKEAQNK AAKDSIEHLA DIYLSSAKDE PGSTYGDVSG FPNVNDNGYM
801: GIASSLGNQP LSKEDSASFS SASPSRALDP RLDVSKRSMG SISALKELCM MEGLGVNFLS TPAPVSTNSV QKDEVHAQVE IDGKIFGKGI GLTWDEAKMQ
901: AAEKALGNLR SKLGQSIQKM QSSPRPHQGF SNKRLKQEYP RTMQRMPSSA RYPRNAPPIP
101: EEIHLVAMHS RNDDRPCFWG FIVTLGLYDS CLVMLNLRCL GIVFDLDETL IVANTMRSFE DRIDALQRKI NSEVDPQRIS GMQAEVKRYL DDKNILKQYA
201: ENDQVVDNGR VIKVQSEIVP ALSDSHQPIV RPLIRLQDKN IILTRINPQI RDTSVLVRLR PAWEDLRSYL TARGRKRFEV YVCTMAERDY ALEMWRLLDP
301: DSNLINSKEL LGRIVCVKSG LKKSLFNVFQ DGSCDPKMAL VIDDRLKVWD ERDQPRVHVV PAFAPYYAPQ AEASNTIPVL CVARNVACNV RGGFFKDFDD
401: GLLQKIPQIA YEDDIKDVPS PPDVSNYLVS EDDGSISNGN RDPFLFDGMA DAEVERKLKD ALAAASTFPV TTANLDPRLT SLQYTMVPSG SVPPPTAQAS
501: MMPFPHVQFP QPATLVKPMG QAAPSDPSLH SSPAREEGEV PESELDPDTR RRLLILQHGQ DTRDHASAEP PFPVRHPVQA SAPRVPSSRG VWFPVEEEIG
601: SQPLNRVVPK EFPVDSGPLG IEKPRLHHPS FFNKVESSIS SDRILHDSHQ RLPKEMYHRD DRPRLNHMLS SYRSFSGDDI PFSRSSSSHR DLDSESGHSV
701: LHADTPVAVL HEIALKCGTK VDFMSSLVAS TELKFSLEAW FSGKKIGHGF GRTRKEAQNK AAKDSIEHLA DIYLSSAKDE PGSTYGDVSG FPNVNDNGYM
801: GIASSLGNQP LSKEDSASFS SASPSRALDP RLDVSKRSMG SISALKELCM MEGLGVNFLS TPAPVSTNSV QKDEVHAQVE IDGKIFGKGI GLTWDEAKMQ
901: AAEKALGNLR SKLGQSIQKM QSSPRPHQGF SNKRLKQEYP RTMQRMPSSA RYPRNAPPIP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.