CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH42483
KRH50009
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	KRH42483	AT2G01950.1	19000166
AT2G28840.1	KRH58580	AT2G01950.1	19000166
AT2G28840.1	KRH10835	AT4G21670.1	18541146
AT2G28840.1	KRH20483	AT4G21670.1	18541146
AT2G28840.1	KRH21480	AT4G21670.1	18541146
AT2G28840.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10274	Soybean	nucleus	94.9	96.4
KRH29806	Soybean	nucleus	81.15	81.88
KRH24806	Soybean	nucleus	80.93	81.66
VIT_06s0004g04550.t01	Wine grape	nucleus	72.28	80.69
PGSC0003DMT400001171	Potato	nucleus	71.4	72.2
Solyc11g066020.1.1	Tomato	nucleus	71.18	71.97
CDX83303	Canola	cytosol	71.62	70.99
PGSC0003DMT400077953	Potato	nucleus	69.18	70.43
CDY47891	Canola	cytosol	70.95	70.33
Bra011923.1-P	Field mustard	nucleus	71.18	70.24
CDY15789	Canola	cytosol	70.73	69.96
Solyc06g076050.2.1	Tomato	nucleus	69.18	69.8
AT2G28840.1	Thale cress	cytosol	70.07	69.3
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	67.41	69.09
Bra035664.1-P	Field mustard	nucleus	68.07	68.07
GSMUA_Achr10P...	Banana	nucleus	66.08	68.04
CDX95759	Canola	cytosol	70.07	67.81
CDX77214	Canola	cytosol	68.07	67.77
KRG99867	Soybean	nucleus	65.63	67.12
GSMUA_Achr7P18180_001	Banana	cytosol	64.97	66.44
Os05t0112000-01	Rice	cytosol	65.19	65.33
KRH46816	Soybean	cytosol	63.41	65.3
CDY31737	Canola	cytosol	68.07	64.36
Bra000480.1-P	Field mustard	plastid	69.62	63.69
TraesCS1D01G035300.1	Wheat	cytosol	62.75	62.89
TraesCS1A01G034300.2	Wheat	cytosol	62.08	62.08
EES18892	Sorghum	nucleus	62.75	60.86
TraesCS4B01G207400.1	Wheat	cytosol	60.31	60.85
TraesCS4D01G208300.1	Wheat	cytosol	59.65	59.51
TraesCS4A01G097000.2	Wheat	cytosol	59.42	59.03
EER92481	Sorghum	nucleus	58.31	58.71
TraesCS1B01G050200.3	Wheat	cytosol	62.53	58.02
GSMUA_Achr6P33430_001	Banana	nucleus	63.41	58.01
Os03t0275300-01	Rice	nucleus	59.65	57.85
Os01t0974400-01	Rice	cytosol	56.32	56.95
TraesCS3D01G537900.1	Wheat	cytosol	57.65	56.77
TraesCS3A01G532700.1	Wheat	cytosol	57.87	56.49
TraesCS3B01G609500.1	Wheat	cytosol	57.87	56.25
EES02150	Sorghum	cytosol	59.2	55.17
KRH46162	Soybean	cytosol	39.47	51.45
Zm00001d025843_P001	Maize	plastid	23.06	50.49
TraesCS7D01G304700.1	Wheat	cytosol	22.62	50.0
HORVU1Hr1G043970.3	Barley	plastid	24.39	38.87
KRH18952	Soybean	cytosol, nucleus, plastid	29.93	26.57
KRH09105	Soybean	nucleus	29.49	26.03
KRG91461	Soybean	cytosol, nucleus, plastid	29.49	25.98
KRH38558	Soybean	nucleus	29.27	25.83
KRH35355	Soybean	nucleus	29.27	25.78
KRH02947	Soybean	cytosol, nucleus, plastid	29.05	25.69

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100786708	MapMan:19.2.2.1.5.3.2	EMBL:ACUP02008454	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_13G335300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1M4V9
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH23057	ProteinID:KRH23057
ProteinID:KRH23057.1	PFAM:PF12796	PFAM:PF13857	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI00023CF5D7
InterPro:Znf_RING	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:42882727..42886024

Molecular Weight (calculated)

48557.1 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.099

Length

451 amino acids

Sequence
(BLAST)

001: MGQSLSCSGN HDHGLFTAVL HGDLQIVTTL LDSDPSLLHQ TTLYDRHSPL HIAAANGQIE ILSRLLDGSL NPDVLNRHKQ TPLMLAAMHG NIACVEKLLQ
101: AGANVLMFDT IYGRTCLHYS AYYGHSSCLK AILSAAQSSP VAASWGFARF VNIRDGKGAT PLHLAARQRR SECVHILLDS GALVCASTGG YGCPGSTPLH
201: LAARGGSLDC IRELLAWGAD RLQRDASGRI PYMVALKHKH GACASLLNPT SAEPLVWPSP LKFISELNPE AKALLEQALM DANREREKNI LKGSSYSLPS
301: PSHSDGVADN TSEVIPHPLH VSESELCCIC FEQVCTIEVQ NCGHQMCAQC TLALCCHNKP NPATACLTPP VCPFCRSTIT RLVVVKTECH DETDQDSVDI
401: NCSKLSKSSR KLRNLNDIGS SSFKGLSSVS SFGKLGSRSS GRIAAEWLDK Q

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.