CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35355	Soybean	nucleus	95.7	95.7
KRH09105	Soybean	nucleus	85.35	85.52
KRH38558	Soybean	nucleus	85.16	85.32
VIT_16s0100g00690.t01	Wine grape	nucleus	84.38	84.38
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	80.08	80.23
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	79.69	79.84
GSMUA_Achr11P...	Banana	plastid	39.84	76.4
AT5G07270.1	Thale cress	cytosol	73.63	73.49
CDY66355	Canola	cytosol	73.44	73.29
CDX70022	Canola	cytosol	73.44	73.01
Bra009278.1-P	Field mustard	cytosol	73.44	73.01
CDX98991	Canola	cytosol	73.05	72.76
Os10t0521600-01	Rice	cytosol	32.62	69.01
GSMUA_Achr11P...	Banana	cytosol	68.36	67.96
TraesCS1D01G187300.1	Wheat	cytosol	63.67	62.69
TraesCS1B01G196800.1	Wheat	cytosol	63.67	62.69
HORVU1Hr1G048560.1	Barley	cytosol	63.48	62.5
TraesCS1A01G189100.1	Wheat	cytosol	63.48	62.5
EER92045	Sorghum	cytosol, nucleus, plastid	63.09	62.12
Zm00001d029663_P001	Maize	cytosol	62.5	61.54
GSMUA_Achr11P...	Banana	mitochondrion	32.42	57.24
KRH18952	Soybean	cytosol, nucleus, plastid	49.61	50.0
KRH02947	Soybean	cytosol, nucleus, plastid	49.41	49.61
KRH10274	Soybean	nucleus	25.78	29.73
KRH23057	Soybean	nucleus	25.98	29.49
KRH46162	Soybean	cytosol	19.92	29.48
KRH29806	Soybean	nucleus	25.59	29.31
KRH24806	Soybean	nucleus	25.2	28.86
KRG99867	Soybean	nucleus	23.63	27.44
KRH46816	Soybean	cytosol	23.44	27.4

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100785638	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02012689	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_20G156600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1NGR3	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:KRG91461	ProteinID:KRG91461	ProteinID:KRG91461.1	PFAM:PF12796	PFAM:PF13637	PFAM:PF13857
PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF35	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000233DE68	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:39556596..39561793

Molecular Weight (calculated)

54936.7 Da

IEP (calculated)

7.030

GRAVY (calculated)

-0.032

Length

512 amino acids

Sequence
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDLVEAKMLL NCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VALLLENGAD VNSRNYCGQT ALMQACRYGH WEVAQTLLLF
101: RCNVIRADYL SGRTALHFAA VHGHVRCIRL VVADFVPSAP YQAIHAGTAV DRGGGSNVKG KHEHSALSKF VNKTADGGIT ALHMAALNGY FDCVQLLLDL
201: NANVNAVTYN YGTSMDLIGA GSTPLHYAAC GGNLKCCQIL VAHGASRLAL NCNGWLPLDI ARMWGRHWLE QLLAPSSDAT MPTFSHSNYL SLPLMSVLNI
301: AREYGLQSST ASSDEIDFCA VCLERPCSVA AEGCGHELCV RCALYLCSTN NVSSEMVGPP GSIPCPLCRH GVVSFVKLPG SQAKENKLHV SLGLCTPCML
401: HPRDLDKPSL SHTPEVGRNR VASVPSEILC PVTCSPFPSM AIPLCTCNDG PCPSFEPREV ETQDGLPHHS QASTVDQDKI EGPRLDKTTC SSMFWGRRSC
501: SREHQCNSEI NA

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.