CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029663_P001	Maize	cytosol	96.15	96.15
Os10t0521600-01	Rice	cytosol	41.73	89.67
TraesCS1D01G187300.1	Wheat	cytosol	89.23	89.23
TraesCS1B01G196800.1	Wheat	cytosol	89.23	89.23
TraesCS1A01G189100.1	Wheat	cytosol	89.23	89.23
HORVU1Hr1G048560.1	Barley	cytosol	89.23	89.23
GSMUA_Achr11P...	Banana	plastid	35.58	69.29
VIT_16s0100g00690.t01	Wine grape	nucleus	65.38	66.41
GSMUA_Achr11P...	Banana	cytosol	65.58	66.21
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	64.04	65.17
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	63.46	64.58
KRH35355	Soybean	nucleus	62.69	63.67
KRH38558	Soybean	nucleus	62.31	63.41
KRH09105	Soybean	nucleus	62.31	63.41
KRG91461	Soybean	cytosol, nucleus, plastid	62.12	63.09
CDX98991	Canola	cytosol	60.96	61.67
CDX70022	Canola	cytosol	60.58	61.16
Bra009278.1-P	Field mustard	cytosol	60.58	61.16
CDY66355	Canola	cytosol	59.81	60.62
AT5G07270.1	Thale cress	cytosol	59.42	60.23
GSMUA_Achr11P...	Banana	mitochondrion	32.88	58.97
KXG19180	Sorghum	cytosol	42.12	53.94
EES05937	Sorghum	nucleus	47.69	49.9
OQU80200	Sorghum	nucleus	44.23	47.62
CDY27425	Canola	cytosol	7.12	44.05
EER92481	Sorghum	nucleus	25.38	29.46
EES18892	Sorghum	nucleus	24.04	26.88
EES02150	Sorghum	cytosol	24.81	26.65

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:8062896	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5WUM2	EnsemblPlants:EER92045	ProteinID:EER92045	ProteinID:EER92045.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF13637	PFAM:PF13857
PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF35	SMART:SM00184	SMART:SM00248	EnsemblPlantsGene:SORBI_3001G322000	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI0001A81F10	RefSeq:XP_002465047.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:

Description

hypothetical protein

Coordinates

chr1:+:60943550..60947681

Molecular Weight (calculated)

55552.2 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.044

Length

520 amino acids

Sequence
(BLAST)

001: MGNSLGCSAS GERLVSAARD GDAVEARMLL ELSPALARYS TFGGLNTPLH FAAAKGHLDI VTMLLEKGAD VNARNYCGQT ALMHACRHGH WEVVQMLLLF
101: RCNVTRADYL SGRTALHFAA HDGFVRCIRL LVADFVPSVA LEDIASSVVD GGDCQTNSGS SPNSLLGQKF NESARVRYIN KPADGGVTAL HMAALNGHLD
201: CMQLLIDLGA NVSAVTFPYG TTTNLIGAGS TPLHYAAGGG KQECCELLIS KGASRLTLNC NGWLPVDVAR IFGRRSLEPL LSPNSHSNVP VFQPSSYLAL
301: PLMSILNIAR EFGLQHTVPS ADDNDLCSVC LERSCSVAAE GCSHEFCIKC ALYLCSTSNI RVEFTGPPGS IPCPLCRNGI MSFTKLPSTP TEGLKSSSAL
401: TFCNPCILNT RSMDSPATVS KAEIRRNRVA AVSSELVCPI TCSPFPSSAL PTCRCSDDDP CGATDAQDGS EAQSPRPSHC VSMELDKRGE EDLDRTSCSG
501: MFWSRRSCHR EQQCDAEINA

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.