CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009278.1-P	Field mustard	cytosol	100.0	100.0
CDX98991	Canola	cytosol	97.86	98.05
CDY66355	Canola	cytosol	92.23	92.59
AT5G07270.1	Thale cress	cytosol	91.84	92.2
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	74.95	75.54
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	74.76	75.34
KRH38558	Soybean	nucleus	74.56	75.15
KRH09105	Soybean	nucleus	74.56	75.15
KRH35355	Soybean	nucleus	73.01	73.44
KRG91461	Soybean	cytosol, nucleus, plastid	73.01	73.44
GSMUA_Achr11P...	Banana	plastid	37.86	73.03
Os10t0521600-01	Rice	cytosol	31.84	67.77
GSMUA_Achr11P...	Banana	cytosol	63.11	63.11
TraesCS1A01G189100.1	Wheat	cytosol	62.72	62.12
TraesCS1B01G196800.1	Wheat	cytosol	62.72	62.12
TraesCS1D01G187300.1	Wheat	cytosol	62.72	62.12
HORVU1Hr1G048560.1	Barley	cytosol	62.52	61.92
EER92045	Sorghum	cytosol, nucleus, plastid	61.16	60.58
Zm00001d029663_P001	Maize	cytosol	60.58	60.0
GSMUA_Achr11P...	Banana	mitochondrion	28.93	51.38
CDY51284	Canola	cytosol	46.21	47.22
CDY02760	Canola	cytosol	45.83	46.64
CDY27425	Canola	cytosol	7.38	45.24
CDY25888	Canola	extracellular, vacuole	37.67	42.08
CDY65199	Canola	cytosol, mitochondrion, nucleus	13.4	32.09
CDX83303	Canola	cytosol	26.02	29.45
CDY47891	Canola	cytosol	25.63	29.01
CDX95759	Canola	cytosol	26.21	28.97
CDY15789	Canola	cytosol	25.63	28.95
CDX77214	Canola	cytosol	24.85	28.26
CDY31737	Canola	cytosol	25.05	27.04

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078C023	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX70022	ProteinID:CDX70022	ProteinID:CDX70022.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00136119001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	PFAM:PF13857	ScanProsite:PS00518	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF35	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI000254379B	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

BnaA10g23710D

Coordinates

chrLK031790:+:2740178..2743294

Molecular Weight (calculated)

55744.7 Da

IEP (calculated)

6.815

GRAVY (calculated)

-0.097

Length

515 amino acids

Sequence
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDYVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLEKGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFVPSEQ RNPLPESGVV VTPRNKSEQS ALSKFVNKAA DGGITALHMA ALNGLFDCVQ LLLDLEANVS
201: AVTFHYGTSM DMIGAGSTPL HYAACGGNLK CCQILLARGA RKMTLNCNGW LPIDIARMWS RHWLEPLLSP NSDVVIPLFP RSSYLSLPLL SILNIAREFG
301: LQSTTISDEV DICAVCLERT CTVAAEGCEH QLCVRCALYL CSSSNVPSVT VDPPGSIPCP LCRHGIVSFK RLPSSLTKEL KLPMSLGFCA PCMLHTGDAR
401: DQSSPTTEQQ QQRSSKTRAA SVSSDMFCPV TCSPFPSVNI PLCTCSDGTC PNFETHGAER DGEEHDESSP PPRVATEQEK VDEGQRLGKT TTCSSMFWGR
501: RSCSRENQCN SEINA

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.