CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51284	Canola	cytosol	93.28	85.32
CDY02760	Canola	cytosol	86.77	79.05
CDY65199	Canola	cytosol, mitochondrion, nucleus	36.44	78.14
KRH18952	Soybean	cytosol, nucleus, plastid	59.44	53.94
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	59.0	53.75
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	59.0	52.92
KRH02947	Soybean	cytosol, nucleus, plastid	58.35	52.75
GSMUA_Achr3P04900_001	Banana	nucleus	53.15	51.15
GSMUA_Achr1P10240_001	Banana	nucleus	49.24	51.13
GSMUA_Achr4P02080_001	Banana	nucleus	55.53	51.0
EES05937	Sorghum	nucleus	54.45	50.5
TraesCS6B01G385200.1	Wheat	cytosol	52.71	48.5
TraesCS6A01G352300.1	Wheat	cytosol	52.49	48.4
TraesCS6D01G335000.2	Wheat	cytosol	52.28	48.2
Os02t0791200-01	Rice	mitochondrion	54.88	47.65
TraesCS7A01G145900.1	Wheat	cytosol	47.72	45.74
HORVU7Hr1G029900.6	Barley	cytosol	46.85	45.38
TraesCS7D01G147400.1	Wheat	cytosol	47.29	45.32
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	54.23	45.05
OQU80200	Sorghum	nucleus	47.07	44.93
TraesCS7B01G048300.1	Wheat	cytosol	46.85	44.91
Os08t0258200-02	Rice	nucleus	46.42	43.23
Zm00001d050184_P010	Maize	plasma membrane	47.07	41.33
CDY66355	Canola	cytosol	42.3	38.01
CDX70022	Canola	cytosol	42.08	37.67
CDX98991	Canola	cytosol	41.87	37.55
CDY27425	Canola	cytosol	6.29	34.52
CDY47891	Canola	cytosol	22.78	23.08
CDX77214	Canola	cytosol	22.56	22.96
CDY15789	Canola	cytosol	22.56	22.81
CDX83303	Canola	cytosol	21.69	21.98
CDY31737	Canola	cytosol	22.56	21.8
CDX95759	Canola	cytosol	21.69	21.46

Protein Annotations

Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078GMP9	UniProt:A0A078GMP9
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY25888	ProteinID:CDY25888	ProteinID:CDY25888.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00033346001	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF00097
PFAM:PF12796	PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
SignalP:SignalP-noTM	UniParc:UPI0004EECB94	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

BnaC09g32600DBnaC09g32600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMP9]

Coordinates

chrLK032182:+:33950..36018

Molecular Weight (calculated)

49361.9 Da

IEP (calculated)

7.730

GRAVY (calculated)

0.028

Length

461 amino acids

Sequence
(BLAST)

001: MSNILVTFIL IIVSLLVESG VDINLRNYRG QTALMQACQH GHWEVVLTLI LFGANIHRSD YLNGGTALHL AALNGHPRCI RILLSEYIPS VPNCWSLLKS
101: NKTSVSGFDR SVLQEVINRA ADGGITPLHV AALNGHIETV QLLLDLGASV TQVTVEDGTT IDLIGAGSTA LHYASCGGNT QCCQLLIGKG ASLAAINSNG
201: WTPLMVARSW HRDWLEETVN PTTEQQPQSH PPKVPSPFLC LPLMSIVKIA QECGWRENDC LTPCRDPCAV CLERKCTVAA DGCGHEFCTN CALYLSTTTI
301: TSSKTTSQAT PGSVPCPLCR HGIASFTRLP DTTAITTTVT SSRTSISLSF CTCSSSSDVL DTALLTTNTQ YSCNKPVVSR TGSRISQSVG SSSSFRSLGC
401: HRFPPSLCLG GSDVDEPQRR LMNGSYSRSG LGFRRSASQV EGKRSWFSAF NHCVTAGGTA C

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.