CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02947	Soybean	cytosol, nucleus, plastid	96.06	95.69
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	73.03	73.32
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	72.24	71.4
GSMUA_Achr4P02080_001	Banana	nucleus	67.32	68.13
GSMUA_Achr3P04900_001	Banana	nucleus	63.78	67.64
CDY02760	Canola	cytosol	66.14	66.4
Bra020414.1-P	Field mustard	plastid	65.94	66.34
GSMUA_Achr1P10240_001	Banana	nucleus	57.87	66.22
AT5G57740.1	Thale cress	cytosol	65.75	65.75
CDY51284	Canola	cytosol	64.96	65.48
EES05937	Sorghum	nucleus	63.78	65.19
TraesCS6D01G335000.2	Wheat	cytosol	63.58	64.6
TraesCS6A01G352300.1	Wheat	cytosol	63.39	64.4
TraesCS6B01G385200.1	Wheat	cytosol	63.39	64.27
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.96	64.08
HORVU7Hr1G029900.6	Barley	cytosol	57.68	61.55
TraesCS7B01G048300.1	Wheat	cytosol	57.28	60.5
TraesCS7A01G145900.1	Wheat	cytosol	57.09	60.29
TraesCS7D01G147400.1	Wheat	cytosol	57.09	60.29
Os02t0791200-01	Rice	mitochondrion	62.99	60.26
OQU80200	Sorghum	nucleus	56.89	59.83
CDY25888	Canola	extracellular, vacuole	53.94	59.44
Os08t0258200-02	Rice	nucleus	57.28	58.79
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	62.4	57.12
Zm00001d050184_P010	Maize	plasma membrane	56.69	54.86
KRH09105	Soybean	nucleus	51.77	51.47
VIT_18s0001g14720.t01	Wine grape	cytosol	9.06	51.11
KRH38558	Soybean	nucleus	51.38	51.08
KRG91461	Soybean	cytosol, nucleus, plastid	50.0	49.61
KRH35355	Soybean	nucleus	49.8	49.41
CDY65199	Canola	cytosol, mitochondrion, nucleus	18.31	43.26
Bra020415.1-P	Field mustard	mitochondrion	17.52	41.98
KRH10274	Soybean	nucleus	26.38	30.18
KRH23057	Soybean	nucleus	26.57	29.93
KRH29806	Soybean	nucleus	25.39	28.86
KRH24806	Soybean	nucleus	24.8	28.19
KRH46162	Soybean	cytosol	18.5	27.17
KRG99867	Soybean	nucleus	23.43	26.98
KRH46816	Soybean	cytosol	23.03	26.71

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100801375	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02008150	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_13G091900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1LVV7	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:KRH18952	ProteinID:KRH18952	ProteinID:KRH18952.1	ProteinID:KRH18953.1	PFAM:PF12796	PRINTS:PR01415
ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22
SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000233BAA3	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:20666186..20672880

Molecular Weight (calculated)

54974.4 Da

IEP (calculated)

7.395

GRAVY (calculated)

-0.113

Length

508 amino acids

Sequence
(BLAST)

001: MKFLSLVGNS FGCSASGERL VSAARDGDVQ EAKALLEYNP RLARYSTFGV RNSPLHYSAA HGHHEIVYLL LESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: QTLVIFNANI HKADYLNGGT ALHLAALNGH TRCIRLILAD YIPSVPNFWN ALQTGDHKSI SEFDQSGLCE VINRTADGGI TALHMAALNG HVESVQLLLD
201: LGASVSEVTV EDGTTIDLIG SGSTPLHYAA CGGNQQCCQL LIAKGANLTA ENANGWTPLM VARSWHRDWL EDILKTPPAD PLQVLPSPYI SLPLMSIVRI
301: ARECGWRTND LAPCLDPCAV CLERKCTVAV EGCDHEFCTQ CALYLCSTNS TSTTTTGPPG SIACPLCRHG IVSFVKLPDA RPLHKEMQRT SNLSLTFCTC
401: SSEVLGDSSD MTTPFCKPTS RGSKNSSPSR SFRSISCQGF PSFRMNPSLC LGADVSPSLV PCTVGRNVRN HLARCSGSSF RRSSSQTERR KSSWFCSLNQ
501: SVDTGSGC

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.