Factsheet for Solyc07g006350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	95.91	97.43
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	75.29	76.03
KRH18952	Soybean	cytosol, nucleus, plastid	71.4	72.24
KRH02947	Soybean	cytosol, nucleus, plastid	70.23	70.78
GSMUA_Achr4P02080_001	Banana	nucleus	68.48	70.12
GSMUA_Achr3P04900_001	Banana	nucleus	64.98	69.73
EES05937	Sorghum	nucleus	65.37	67.61
GSMUA_Achr1P10240_001	Banana	nucleus	57.78	66.89
CDY02760	Canola	cytosol	65.56	66.6
Bra020414.1-P	Field mustard	plastid	65.37	66.53
TraesCS6D01G335000.2	Wheat	cytosol	64.4	66.2
TraesCS6A01G352300.1	Wheat	cytosol	64.4	66.2
AT5G57740.1	Thale cress	cytosol	65.18	65.94
TraesCS6B01G385200.1	Wheat	cytosol	64.2	65.87
CDY51284	Canola	cytosol	64.4	65.67
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.2	64.08
Os02t0791200-01	Rice	mitochondrion	64.59	62.52
HORVU7Hr1G029900.6	Barley	cytosol	57.39	61.97
OQU80200	Sorghum	nucleus	57.59	61.28
TraesCS7B01G048300.1	Wheat	cytosol	57.2	61.12
TraesCS7A01G145900.1	Wheat	cytosol	57.0	60.91
TraesCS7D01G147400.1	Wheat	cytosol	57.0	60.91
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	64.79	60.0
CDY25888	Canola	extracellular, vacuole	52.92	59.0
Os08t0258200-02	Rice	nucleus	56.81	58.99
Zm00001d050184_P010	Maize	plasma membrane	57.78	56.57
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	50.58	50.88
CDY65199	Canola	cytosol, mitochondrion, nucleus	18.48	44.19
Bra020415.1-P	Field mustard	mitochondrion	17.32	41.98
Solyc11g066020.1.1	Tomato	nucleus	26.46	30.49
Solyc06g076050.2.1	Tomato	nucleus	25.68	29.53
Solyc09g010690.2.1	Tomato	nucleus	23.15	26.39

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009653
GO:GO:0009719	GO:GO:0009733	GO:GO:0009791	GO:GO:0009987	GO:GO:0010311	GO:GO:0010366
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0051865	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:K4CBA6	PFAM:PF00023	PFAM:PF13637	PRINTS:PR01415
ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc07g006350.2	EnsemblPlants:Solyc07g006350.2.1	UniParc:UPI000276C591
InterPro:Znf_RING	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:1166641..1172812

Molecular Weight (calculated)

56121.4 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.059

Length

514 amino acids

Sequence
(BLAST)

001: MPERYPKTMR FLSLVGNSFG CSASGERLVS AARDGDIQEA KALLDYNPRL VRYSTFGVRN SPLHYSAAQG HHEIVSLLLE SGVDINLRNY RGQTALMQAC
101: QYGHWEVVQI LILFMANIHK ADYLNGGTSL HLAALNGHSR CIRLLLADYI PSIPNFCNVM RKRSKNEDSI QEFDDFALHE VINRPADGGI TALHMAALNG
201: HVESLQLLLD LGASVTKVTV EDGTTIDLIG AGSTPLHYAA CGGNAQCCQL LIARGASLNA ENVNGWTSLM VARSWHRDGL EEILSTRPEK QPRPLPSPFL
301: CLPLMSIVKI ARECGWRTID SPTSTCLDPC VVCLERKCTV AAEGCFHEFC THCALYLCST SNTSIAAHGP PGSIPCPLCR HGIVSFIKLA DTTPIIKEAA
401: RTSLSLPFCS CTADGQEPTT LETPLCKPDL YCSRLSPLGS SFLSLSCQKF PALRFSPGLC MGTPDTSPSL VPRTGEREHL TRCSRPSFRR STSNVEARRW
501: LCSFSHSVET GSSF

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.