Factsheet for Solyc11g066020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plasma membrane 1
endoplasmic reticulum 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078550.2.1
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G28840.1	Solyc02g078550.2.1	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001171	Potato	nucleus	96.86	96.86
Solyc06g076050.2.1	Tomato	nucleus	82.74	82.55
VIT_06s0004g04550.t01	Wine grape	nucleus	68.16	75.25
KRH29806	Soybean	nucleus	72.65	72.48
KRH10274	Soybean	nucleus	71.3	71.62
KRH24806	Soybean	nucleus	71.52	71.36
KRH23057	Soybean	nucleus	71.97	71.18
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	69.73	70.68
GSMUA_Achr7P18180_001	Banana	cytosol	68.61	69.39
AT2G28840.1	Thale cress	cytosol	70.4	68.86
CDX83303	Canola	cytosol	69.06	67.69
GSMUA_Achr10P...	Banana	nucleus	66.37	67.58
CDY15789	Canola	cytosol	68.39	66.89
CDY47891	Canola	cytosol	68.16	66.81
Bra011923.1-P	Field mustard	nucleus	68.16	66.52
Bra035664.1-P	Field mustard	nucleus	67.04	66.3
Os05t0112000-01	Rice	cytosol	66.37	65.78
CDX95759	Canola	cytosol	68.16	65.24
CDX77214	Canola	cytosol	66.14	65.12
TraesCS1D01G035300.1	Wheat	cytosol	65.02	64.44
EES18892	Sorghum	nucleus	66.14	63.44
TraesCS1A01G034300.2	Wheat	cytosol	64.13	63.41
CDY31737	Canola	cytosol	66.59	62.26
Solyc09g010690.2.1	Tomato	nucleus	61.66	60.98
Bra000480.1-P	Field mustard	plastid	67.04	60.65
TraesCS4B01G207400.1	Wheat	cytosol	60.54	60.4
TraesCS1B01G050200.3	Wheat	cytosol	65.02	59.67
TraesCS4D01G208300.1	Wheat	cytosol	59.87	59.07
TraesCS4A01G097000.2	Wheat	cytosol	60.09	59.03
TraesCS3A01G532700.1	Wheat	cytosol	60.54	58.44
TraesCS3D01G537900.1	Wheat	cytosol	59.64	58.08
TraesCS3B01G609500.1	Wheat	cytosol	59.87	57.54
GSMUA_Achr6P33430_001	Banana	nucleus	63.45	57.4
EER92481	Sorghum	nucleus	57.62	57.37
Os01t0974400-01	Rice	cytosol	56.05	56.05
Os03t0275300-01	Rice	nucleus	58.07	55.7
EES02150	Sorghum	cytosol	59.42	54.75
TraesCS7D01G304700.1	Wheat	cytosol	22.65	49.51
Zm00001d025843_P001	Maize	plastid	22.42	48.54
HORVU1Hr1G043970.3	Barley	plastid	25.34	39.93
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	30.49	26.46
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	30.27	26.42

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4D9L1	PFAM:PF00023	PFAM:PF12796
ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g066020.1	EnsemblPlants:Solyc11g066020.1.1	UniParc:UPI0002769C9F
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:	:	:

Description

No Description!

Coordinates

chr11:-:51657153..51659535

Molecular Weight (calculated)

48503.9 Da

IEP (calculated)

7.610

GRAVY (calculated)

-0.250

Length

446 amino acids

Sequence
(BLAST)

001: MGQGLSCGTS DEHGLFSAVQ CGDLDTLKSV LDKNPSLIHH STVYDRQSPL HIAAANGQIE IVTMLLNKSI NPDLLNRYKQ TPLMLAAMHG KISCVEKLIE
101: AGANILKFDS LNGRTCLHYA AYYGHFESLK AILSTARTSH VAASWGYARF VNVRDGKGAT PLHLAARQRR PECVHILLDN GALVCASTGG YGFPGSTPLH
201: LAARGGSLDC IRELLAWGAD RLHRDSTGRI PYTVALRYHH GACAALLNPS LAEPLVWPSP LKFISQLNDE AKALLERALM EANKEREKNI LKGTDYSPPS
301: PSQSDAGMDD NMSEVSDTEV CCICFDQLCT IEVQDCGHQM CAHCVLALCC HNKPNPTTTS PPEPVCPFCR SNIVQLQAIK VTKNNDTDSD LHSSKLRKTR
401: RSRNFSEGSS SFKGLSAVSS FGKMTGRGSG RIAADNEWID KPITLD

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.