Factsheet for Bra035664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra024839.1-P
Bra024840.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Bra024839.1-P	AT2G01950.1	19000166
AT2G28840.1	Bra024840.1-P	AT2G01950.1	19000166
AT2G28840.1	Bra013546.1-P	AT4G21670.1	18541146
AT2G28840.1	Bra020905.1-P	AT4G21670.1	18541146
AT2G28840.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77214	Canola	cytosol	95.79	95.36
CDY31737	Canola	cytosol	96.45	91.19
Bra011923.1-P	Field mustard	nucleus	88.91	87.75
AT2G28840.1	Thale cress	cytosol	86.25	85.31
Bra000480.1-P	Field mustard	plastid	86.47	79.11
VIT_06s0004g04550.t01	Wine grape	nucleus	63.41	70.79
KRH10274	Soybean	nucleus	67.63	68.69
KRH23057	Soybean	nucleus	68.07	68.07
Solyc11g066020.1.1	Tomato	nucleus	66.3	67.04
KRH29806	Soybean	nucleus	66.08	66.67
PGSC0003DMT400001171	Potato	nucleus	65.85	66.59
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	64.75	66.36
KRH24806	Soybean	nucleus	65.63	66.22
GSMUA_Achr7P18180_001	Banana	cytosol	64.52	65.99
PGSC0003DMT400077953	Potato	nucleus	64.75	65.91
Solyc06g076050.2.1	Tomato	nucleus	64.75	65.32
Os05t0112000-01	Rice	cytosol	63.64	63.78
GSMUA_Achr10P...	Banana	nucleus	60.31	62.1
TraesCS1D01G035300.1	Wheat	cytosol	61.42	61.56
TraesCS1A01G034300.2	Wheat	cytosol	60.53	60.53
EES18892	Sorghum	nucleus	60.75	58.92
TraesCS4B01G207400.1	Wheat	cytosol	57.87	58.39
TraesCS4D01G208300.1	Wheat	cytosol	57.65	57.52
TraesCS4A01G097000.2	Wheat	cytosol	57.65	57.27
TraesCS1B01G050200.3	Wheat	cytosol	60.98	56.58
EER92481	Sorghum	nucleus	56.1	56.47
Os03t0275300-01	Rice	nucleus	57.65	55.91
TraesCS3D01G537900.1	Wheat	cytosol	56.54	55.68
GSMUA_Achr6P33430_001	Banana	nucleus	60.75	55.58
TraesCS3A01G532700.1	Wheat	cytosol	56.76	55.41
TraesCS3B01G609500.1	Wheat	cytosol	56.98	55.39
Os01t0974400-01	Rice	cytosol	53.44	54.04
EES02150	Sorghum	cytosol	54.77	51.03
TraesCS7D01G304700.1	Wheat	cytosol	22.17	49.02
Zm00001d025843_P001	Maize	plastid	21.73	47.57
HORVU1Hr1G043970.3	Barley	plastid	24.39	38.87
Bra009278.1-P	Field mustard	cytosol	28.6	25.05
Bra020414.1-P	Field mustard	plastid	26.83	23.96
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.83	23.5
Bra020415.1-P	Field mustard	mitochondrion	7.54	16.04

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra035664	EnsemblPlants:Bra035664.1	EnsemblPlants:Bra035664.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4F3L4
PFAM:PF12796	PFAM:PF13637	PFAM:PF13857	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000254421C
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT2G28840 (E=4e-174) | ankyrin repeat family protein

Coordinates

chrA04:+:12992285..12994318

Molecular Weight (calculated)

48925.5 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.171

Length

451 amino acids

Sequence
(BLAST)

001: MGQSMSCGAR PEHEIFASVQ CGDIVTVRRA ITADPSVLRQ TTAYDRHSLL HVAAASGHIE ILALLLERSS NPDTLNRHKQ TPLMLAAMHG RISCIKNLAQ
101: VGANVLMFDS VNRRTCLHYA AYYGHADCVQ AILSAARSTP VALHWGYARF VNLRDDKGAT PLHLAARQRS PDCVNVLLDS GSLVCASTSL YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKYKH GACGALLNPS SAEPLVWPSP LKFINELNEE AKLLLEQALM DANMEREKTI LNGTDYSLPS
301: PSFSDTASDD DNMSEMSDSE LCCICFEQVC TIEVKDCGHQ MCAQCTLALC CHNKPNLTTS TVNPPVCPFC RSVIARLVVA QNNNKDDRSK SQDEVGDVSS
401: SKLRKHRRSI NLGEESSSFM GLSSIGSFGK VTGRGSGRIV ADNELMDKPI S

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.