Factsheet for GSMUA_Achr10P22760_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P15100_001
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	74.66	74.32
VIT_06s0004g04550.t01	Wine grape	nucleus	66.89	72.52
GSMUA_Achr7P18180_001	Banana	cytosol	72.6	72.11
Os05t0112000-01	Rice	cytosol	68.95	67.11
PGSC0003DMT400077953	Potato	nucleus	67.58	66.82
Solyc11g066020.1.1	Tomato	nucleus	67.58	66.37
PGSC0003DMT400001171	Potato	nucleus	67.58	66.37
TraesCS1D01G035300.1	Wheat	cytosol	68.04	66.22
KRH10274	Soybean	nucleus	67.12	66.22
VIT_08s0007g00200.t01	Wine grape	nucleus	67.12	66.22
KRH23057	Soybean	nucleus	68.04	66.08
Solyc06g076050.2.1	Tomato	nucleus	67.35	66.0
TraesCS1A01G034300.2	Wheat	cytosol	67.81	65.85
KRH29806	Soybean	nucleus	66.89	65.55
KRH24806	Soybean	nucleus	66.67	65.32
EES18892	Sorghum	nucleus	68.95	64.95
KRG99867	Soybean	nucleus	63.7	63.27
KRH46816	Soybean	cytosol	62.56	62.56
GSMUA_Achr6P33430_001	Banana	nucleus	70.09	62.27
TraesCS4B01G207400.1	Wheat	cytosol	63.47	62.19
CDY15789	Canola	cytosol	64.16	61.62
CDY47891	Canola	cytosol	63.93	61.54
Bra011923.1-P	Field mustard	nucleus	63.93	61.27
AT2G28840.1	Thale cress	cytosol	63.7	61.18
TraesCS1B01G050200.3	Wheat	cytosol	67.81	61.11
EER92481	Sorghum	nucleus	62.33	60.94
TraesCS4D01G208300.1	Wheat	cytosol	62.79	60.84
TraesCS3A01G532700.1	Wheat	cytosol	64.16	60.82
TraesCS3D01G537900.1	Wheat	cytosol	63.47	60.7
CDX83303	Canola	cytosol	62.79	60.44
TraesCS3B01G609500.1	Wheat	cytosol	63.93	60.34
Bra035664.1-P	Field mustard	nucleus	62.1	60.31
TraesCS4A01G097000.2	Wheat	cytosol	62.1	59.91
CDX77214	Canola	cytosol	61.64	59.6
Os03t0275300-01	Rice	nucleus	62.79	59.14
CDX95759	Canola	cytosol	62.1	58.37
Os01t0974400-01	Rice	cytosol	58.68	57.62
CDY31737	Canola	cytosol	61.87	56.81
Solyc09g010690.2.1	Tomato	nucleus	58.22	56.54
EES02150	Sorghum	cytosol	61.42	55.58
Bra000480.1-P	Field mustard	plastid	61.19	54.36
KRH46162	Soybean	cytosol	39.95	50.58
TraesCS7D01G304700.1	Wheat	cytosol	23.52	50.49
PGSC0003DMT400023028	Potato	nucleus	58.68	49.52
Zm00001d025843_P001	Maize	plastid	23.29	49.51
HORVU1Hr1G043970.3	Barley	plastid	25.11	38.87
GSMUA_Achr11P...	Banana	plastid	19.41	31.84
GSMUA_Achr1P10240_001	Banana	nucleus	27.17	26.8
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	27.63	26.48
GSMUA_Achr3P04900_001	Banana	nucleus	28.08	25.68
GSMUA_Achr4P02080_001	Banana	nucleus	29.22	25.5
GSMUA_Achr11P...	Banana	cytosol	29.45	25.05
GSMUA_Achr11P...	Banana	mitochondrion	12.79	19.31

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G22760_001	EnsemblPlants:GSMUA_Achr10P22760_001	EnsemblPlants:GSMUA_Achr10T22760_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0RKK1
PFAM:PF00023	PFAM:PF12796	PFAM:PF13857	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000295220C
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

E3 ubiquitin-protein ligase XB3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G22760_001]

Coordinates

chr10:-:27811297..27814827

Molecular Weight (calculated)

47003.8 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.155

Length

438 amino acids

Sequence
(BLAST)

001: MGQGLSCASS SYDHDFFTAV QAGDLQAVDS SLKDDPSLLL RTTIYDRLSA LHIAAANGRV EVLSMILDRS VSPDVLNRDK QTPLMLAAMH GKIECVQKLL
101: DSGANILMFD SVNGRTCLHH AAYYGHSDCL RAILSAAKST HVASSWGFAR FVNVSDGTGA TPLHLAARQK RPSCVHILVD NGALVCASTG RYGFPGSTPL
201: HLAARGGSLD CIRELLARGA DRLQRDSSGR MPYEVALKQN HGECAALLNP SAADPLVWPS ALKFISELDS ETKALLEAAL MEGNREREMK ILKGTTDSLT
301: SPAHSDKAFD DDVSEGSDAE FCSICFDRVC TIEVQDCRHQ MCAQCTLAVC CHSKPNPTTL FLPSPACPFC RSSISRLVTT KARDTGDQNT TSKPRRFRHC
401: SSEGSSSFKG LSSAVGSFGL MGCGSGRITD SSDMVDKL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.