Factsheet for PGSC0003DMT400023028

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010690.2.1	Tomato	nucleus	84.01	96.67
VIT_08s0007g00200.t01	Wine grape	nucleus	54.72	63.96
KRH46816	Soybean	cytosol	53.95	63.93
KRG99867	Soybean	nucleus	54.14	63.72
PGSC0003DMT400077953	Potato	nucleus	52.79	61.85
PGSC0003DMT400001171	Potato	nucleus	52.99	61.66
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	51.83	61.14
GSMUA_Achr7P18180_001	Banana	cytosol	51.06	60.09
Os05t0112000-01	Rice	cytosol	51.06	58.89
GSMUA_Achr10P...	Banana	nucleus	49.52	58.68
TraesCS1D01G035300.1	Wheat	cytosol	50.1	57.78
TraesCS4B01G207400.1	Wheat	cytosol	49.33	57.27
TraesCS1A01G034300.2	Wheat	cytosol	49.71	57.21
TraesCS4D01G208300.1	Wheat	cytosol	49.52	56.86
TraesCS4A01G097000.2	Wheat	cytosol	49.33	56.39
EES18892	Sorghum	nucleus	50.48	56.34
EER92481	Sorghum	nucleus	48.55	56.25
Os03t0275300-01	Rice	nucleus	48.55	54.19
TraesCS1B01G050200.3	Wheat	cytosol	49.9	53.29
GSMUA_Achr6P33430_001	Banana	nucleus	50.1	52.74
Os01t0974400-01	Rice	cytosol	45.09	52.47
TraesCS3A01G532700.1	Wheat	cytosol	46.63	52.38
TraesCS3B01G609500.1	Wheat	cytosol	46.82	52.37
TraesCS3D01G537900.1	Wheat	cytosol	46.05	52.18
EES02150	Sorghum	cytosol	47.01	50.41
KRH46162	Soybean	cytosol	33.53	50.29
Zm00001d025843_P001	Maize	plastid	18.88	47.57
TraesCS7D01G304700.1	Wheat	cytosol	16.96	43.14
HORVU1Hr1G043970.3	Barley	plastid	20.62	37.81
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	24.28	24.66
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	22.93	23.52

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102578831	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1AHM6	PFAM:PF12796
PFAM:PF13637	EnsemblPlantsGene:PGSC0003DMG400008913	PGSC:PGSC0003DMG400008913	EnsemblPlants:PGSC0003DMT400023028	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI000296689B	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Ring zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008913]

Coordinates

chr9:-:1896106..1899880

Molecular Weight (calculated)

56405.5 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.104

Length

519 amino acids

Sequence
(BLAST)

001: MGQKLSCGQQ SNEHGLFIAV QNGEVEKVEA MVDENPNVIR LTTVRGKFSA LHVAAINGQI EVLCMLLDRG VNPDILNRHK QTPLMLAAMH GNVSCVERLI
101: QLGANILMFD SLHGRTCLHY AAYHGHSDCL QSILASAHSA PVAQSWGFAR FVNIRDGSGA TPLHLAARHG RPACVRILLS NEALVCASSG GYGRPGSTPL
201: HLAAREGSLD CVRELLAWGA DRLYRDSSGR IPYIVALKNK HEACAALLNP SSPEPLTWPS SLKFITELDA EAKALLENAL IEANKDREKL ILEKTAVSQI
301: SLSHCDSGLE SDDFEVHFLI LSSQHTDIVN QESENEPADG MNELEADVES TKEAMEGVGY IKGKVRTNVL SFSVLLKLYV RFFVGSDLEL CCICFEQACT
401: IEIQKCGHQM CAHCTLALCC HNKPNPASNS EKVPLCPFCR SDITHLVVVQ NKIDTYEEVS SPSRPRKSRT SFSHAEGDSS SSSSSTSLKV LSPLASFGKL
501: GCRHSGKISA ECIEAFAKP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.