CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG26770
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	OQU92006	AT2G01950.1	19000166
AT2G28840.1	EES05486	AT4G21670.1	18541146
AT2G28840.1	KXG26770	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047806_P001	Maize	cytosol	96.21	96.64
TraesCS4B01G207400.1	Wheat	cytosol	87.28	87.47
TraesCS4D01G208300.1	Wheat	cytosol	87.5	86.73
TraesCS4A01G097000.2	Wheat	cytosol	86.38	85.24
Os03t0275300-01	Rice	nucleus	87.5	84.3
HORVU4Hr1G059710.8	Barley	cytosol	87.05	82.11
VIT_06s0004g04550.t01	Wine grape	nucleus	57.14	63.37
EES18892	Sorghum	nucleus	65.4	63.01
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	61.38	62.5
GSMUA_Achr10P...	Banana	nucleus	60.94	62.33
GSMUA_Achr7P18180_001	Banana	cytosol	60.27	61.22
KRH29806	Soybean	nucleus	59.82	59.96
VIT_08s0007g00200.t01	Wine grape	nucleus	59.15	59.68
KRH24806	Soybean	nucleus	59.38	59.51
KRH10274	Soybean	nucleus	58.04	58.56
KRH23057	Soybean	nucleus	58.71	58.31
KRH46816	Soybean	cytosol	56.92	58.22
PGSC0003DMT400001171	Potato	nucleus	57.81	58.07
KRG99867	Soybean	nucleus	56.92	57.82
Solyc11g066020.1.1	Tomato	nucleus	57.37	57.62
CDY47891	Canola	cytosol	57.81	56.92
PGSC0003DMT400077953	Potato	nucleus	56.25	56.88
CDY15789	Canola	cytosol	57.81	56.8
Bra011923.1-P	Field mustard	nucleus	57.81	56.67
Solyc06g076050.2.1	Tomato	nucleus	56.47	56.6
AT2G28840.1	Thale cress	cytosol	57.59	56.58
Bra035664.1-P	Field mustard	nucleus	56.47	56.1
Solyc09g010690.2.1	Tomato	nucleus	56.47	56.1
CDX83303	Canola	cytosol	56.92	56.04
CDX77214	Canola	cytosol	55.8	55.19
EES02150	Sorghum	cytosol	58.93	54.55
CDX95759	Canola	cytosol	56.47	54.29
GSMUA_Achr6P33430_001	Banana	nucleus	59.15	53.75
CDY31737	Canola	cytosol	56.47	53.04
Bra000480.1-P	Field mustard	plastid	55.58	50.51
PGSC0003DMT400023028	Potato	nucleus	56.25	48.55
KRH46162	Soybean	cytosol	36.61	47.4
KXG19180	Sorghum	cytosol	27.46	30.3
OQU80200	Sorghum	nucleus	28.35	26.29
EER92045	Sorghum	cytosol, nucleus, plastid	29.46	25.38
EES05937	Sorghum	nucleus	28.12	25.35

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:8084936	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5WPG7	EnsemblPlants:EER92481	ProteinID:EER92481	ProteinID:EER92481.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01415	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF19	SMART:SM00248	EnsemblPlantsGene:SORBI_3001G420900	SUPFAM:SSF48403
SUPFAM:SSF57850	unigene:Sbi.7978	UniParc:UPI0001A82CE5	RefSeq:XP_002465483.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:70188537..70193852

Molecular Weight (calculated)

48066.2 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.229

Length

448 amino acids

Sequence
(BLAST)

001: MGHGASCGRP SDEVDFFGAA QAGDTARLAA ALRSRPTLLT RTTLFDRLSA LHIAAAHGHL QVVSLALDLC VHPDVVNRHK QTALMLAAMH GKTDCVRRLL
101: DAGANIVMFD SSHGRTCLHY AAYYGHADCL RTILSAAKSA PVSESWGFAR FVNVRDDTGA TPLHLAARQG WRRCVHVLLE NGAIVSASSG AFGFPGSTPL
201: HLAARGGNLD CVRQLLSWGA DRLQRDSVGR IPYEVAVKRG HVACAALLNP SSAEPLVWPS ALKFISELEP NAKSLLEAAL MEANRERERR ILKGTKNALP
301: SPSHPDDGAH DTAIAEASDA EVCSICFEQA CSIEVRECGH QMCSACTLAL CCHAKPNPAT QSQPQPTCPF CRGGIARLVV ATRTRAGDDE DDEERGRLES
401: PRHRRSRRSM NLSGDAGSTS TLMGSIASSI GKMGRRRTDS SEQVDVKP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.