Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0529500-02 | Rice | extracellular | 74.1 | 74.81 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 73.67 | 73.21 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 67.94 | 71.83 |
| GSMUA_Achr11P... | Banana | cytosol | 2.97 | 71.79 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 71.66 | 71.2 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 71.55 | 71.02 |
| EES05486 | Sorghum | cytosol | 70.06 | 70.66 |
| GSMUA_Achr11P... | Banana | nucleus | 57.86 | 58.79 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 58.81 | 58.38 |
| PGSC0003DMT400057635 | Potato | nucleus | 50.96 | 54.48 |
| Solyc02g078550.2.1 | Tomato | nucleus | 54.67 | 53.98 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 44.37 | 53.05 |
| GSMUA_Achr11P... | Banana | extracellular | 10.19 | 52.46 |
| KRH50009 | Soybean | nucleus | 53.08 | 52.3 |
| KRH20483 | Soybean | nucleus | 53.18 | 52.19 |
| KRH10835 | Soybean | nucleus | 51.49 | 50.63 |
| KRH21480 | Soybean | nucleus | 50.85 | 49.9 |
| CDY31421 | Canola | cytosol | 43.1 | 48.45 |
| Bra038764.1-P | Field mustard | nucleus | 48.62 | 48.36 |
| Bra020905.1-P | Field mustard | cytosol | 43.42 | 48.29 |
| CDX98696 | Canola | nucleus | 47.66 | 48.18 |
| CDX76438 | Canola | cytosol | 43.31 | 48.17 |
| CDX94046 | Canola | nucleus | 48.51 | 48.05 |
| AT4G21670.1 | Thale cress | nucleus | 48.73 | 47.47 |
| CDX79083 | Canola | nucleus | 41.93 | 45.98 |
| Bra013546.1-P | Field mustard | nucleus | 40.98 | 43.96 |
| KXG33725 | Sorghum | cytosol, nucleus, plastid | 34.18 | 43.05 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 7.01 | 41.25 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A1B6PM75 | InterPro:FCP1_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | EnsemblPlants:KXG26770 |
| ProteinID:KXG26770 | ProteinID:KXG26770.1 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 |
| PANTHER:PTHR23081 | PANTHER:PTHR23081:SF11 | SMART:SM00358 | SMART:SM00577 | EnsemblPlantsGene:SORBI_3006G156400 | SUPFAM:SSF54768 |
| SUPFAM:SSF56784 | UniParc:UPI00081ADA9D | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:+:51559366..51568030
Molecular Weight (calculated)
105667.0 Da
IEP (calculated)
6.015
GRAVY (calculated)
-0.496
Length
942 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSLVYYGN TPVGEVEVWP KGQTDLAWAR EIRVDRLSPA SERCPPLAVL HVVAAGARCL VMESKSTATA HEPPPPLVTM HTTCLKDNKT AVFPLGAEEI
101: HLVAMTSKRN MPNGACFWGY KVPLGLYNSC LSMLNLRCLG IVFDLDETLI VANTTRSFED RIDAIQRKLN NEADPQRISG MLAEIKRYQE DKSILKQYIE
201: SDQVTDGGEL YKVQSEVIPP LDDNHQQPMT RPIIRLQEKN IILTRINPSI RDTSVLVRLR PAWDDLRSYL IARGRKRFEI YVCTMAERDY ALEMWRLLDP
301: DSKLINSVQL LDRLVCVKSG SRKSLLNVFH DGSCHPGMAL VIDDRLKVWD EWDQRRVHVV PAFAPYYAPQ AEANFPIPVL CVARNVACNV RAGFFKEFDE
401: GIIPRITEVC YEDELDDIAS APDVCNYFVS EDENAAVSNV NKNPLAFDGM ADAEVEKRMK EASSSFQSAN PITTNVDVMS VAANQHFGTP ISSSTPVAPP
501: LGMLLNNDQD PQPPSLRWPV AQSGHVDSSQ GSPAREEGEV PESELDPDTR RRLLILQHGQ DTRDPAAPFP AGSPAQVSVP PVQSHENWFC LEDEMNPRNL
601: NKVSTEFHLE SDSVHYDKKQ LQHTSYIPIG DNPMSYDRYD YQNQRYPSQP PHSEGHHRFH NHAPTAYRSF SGEDMATWYA PSGQRSSHME SGRHFARYGG
701: IPGVLEEIAL KCGFKVEYRS TLCDTTELQF STEVLIFGEK VGEGVGKTRK EAQWQAADTS LRNLADKFLS WDPDKVTVLK ENDFNRHPKS HRYPGSNIYD
801: TLPVASTSDE SRYMNDRIDT LRKPGASVAA LKELCAVEGY NLDFHAQPSA DGSVGKEIRA QVEIGGKVLG KGVGVTWEEA KLQAAYEAYG TLKSMLGQFV
901: PRQSASPRSM VPNFNKRFNP DFSEALQRIP SGRYSRNDSR FP
101: HLVAMTSKRN MPNGACFWGY KVPLGLYNSC LSMLNLRCLG IVFDLDETLI VANTTRSFED RIDAIQRKLN NEADPQRISG MLAEIKRYQE DKSILKQYIE
201: SDQVTDGGEL YKVQSEVIPP LDDNHQQPMT RPIIRLQEKN IILTRINPSI RDTSVLVRLR PAWDDLRSYL IARGRKRFEI YVCTMAERDY ALEMWRLLDP
301: DSKLINSVQL LDRLVCVKSG SRKSLLNVFH DGSCHPGMAL VIDDRLKVWD EWDQRRVHVV PAFAPYYAPQ AEANFPIPVL CVARNVACNV RAGFFKEFDE
401: GIIPRITEVC YEDELDDIAS APDVCNYFVS EDENAAVSNV NKNPLAFDGM ADAEVEKRMK EASSSFQSAN PITTNVDVMS VAANQHFGTP ISSSTPVAPP
501: LGMLLNNDQD PQPPSLRWPV AQSGHVDSSQ GSPAREEGEV PESELDPDTR RRLLILQHGQ DTRDPAAPFP AGSPAQVSVP PVQSHENWFC LEDEMNPRNL
601: NKVSTEFHLE SDSVHYDKKQ LQHTSYIPIG DNPMSYDRYD YQNQRYPSQP PHSEGHHRFH NHAPTAYRSF SGEDMATWYA PSGQRSSHME SGRHFARYGG
701: IPGVLEEIAL KCGFKVEYRS TLCDTTELQF STEVLIFGEK VGEGVGKTRK EAQWQAADTS LRNLADKFLS WDPDKVTVLK ENDFNRHPKS HRYPGSNIYD
801: TLPVASTSDE SRYMNDRIDT LRKPGASVAA LKELCAVEGY NLDFHAQPSA DGSVGKEIRA QVEIGGKVLG KGVGVTWEEA KLQAAYEAYG TLKSMLGQFV
901: PRQSASPRSM VPNFNKRFNP DFSEALQRIP SGRYSRNDSR FP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.