Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | EES05486 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | KXG26770 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016602_P001 | Maize | nucleus, plastid | 91.24 | 87.24 |
| Os02t0516600-01 | Rice | nucleus, plastid | 69.95 | 69.76 |
| TraesCS5D01G139400.2 | Wheat | plastid | 68.6 | 69.35 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 67.79 | 68.34 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 67.79 | 68.16 |
| HORVU5Hr1G043380.1 | Barley | plastid | 67.39 | 66.76 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 48.25 | 49.11 |
| KRH06829 | Soybean | nucleus | 42.72 | 44.9 |
| KRG94698 | Soybean | nucleus, plastid | 43.94 | 43.64 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 42.86 | 43.62 |
| CDY28532 | Canola | nucleus, plastid | 42.05 | 42.92 |
| CDY48977 | Canola | nucleus, plastid | 42.18 | 42.76 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 42.45 | 41.61 |
| AT3G26730.1 | Thale cress | plastid | 41.64 | 40.03 |
| CDX71433 | Canola | extracellular | 7.14 | 39.55 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 23.18 | 35.76 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:8059596 | UniProt:C5XT84 | ncoils:Coil | EnsemblPlants:EES06877 |
| ProteinID:EES06877 | ProteinID:EES06877.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF00097 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR12983 | SMART:SM00184 |
| EnsemblPlantsGene:SORBI_3004G158200 | SUPFAM:SSF57850 | unigene:Sbi.3092 | UniParc:UPI0001A85B4B | RefSeq:XP_002453901.1 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr4:-:50297677..50305300
Molecular Weight (calculated)
81838.2 Da
IEP (calculated)
7.547
GRAVY (calculated)
-0.543
Length
742 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISPRERTG GHYYPRPHNP SPSTQHGSDR RRHGRRSPPA SVSPPGAAAA AGDGGVGSSS HPVVPAIRES INAPEKVVGF IISGEETITQ EVGSIEECHS
101: SEQGNLGFPV DNFGSVGPYP ERPKMAGSLE ADHLASGSTG HQGNGTQIAA RKNQSVNANH LLNFQYDPIS RPQPRGPRTY PPRRQRKIKP YNKDLFLQAN
201: YKFVVLDTGN YQIESMDPDK MLQWEDIICV RYYSPSEVQC PICLESPLCP QITSCGHIYC FPCILHYLTM GKEDYRGECW KKCPLCFMMV STKDLYTIQI
301: TQVQNFCAGD VATFTLLSRS RNSLTPSIKI SSSESSTADE DPYNVFSKFI VTSDVELSVR EAKLDLSNWL HMADLGLVDD LEKLPYVSAA LEQLEERMKH
401: WIEYRNYGGS PPSKDSFSPG SSFKSRNSFD VNTSHQISGR KISVSDRDMV SGISELSMSP ELSTNSGKGT MSKVNEKCTT TIDSNEHDPY IFYQVSDGQH
501: LILHPLNMRC LLNHFGGSDM LPPRITAKIL ELETVTQSEA IRKRYRFLSH FSLTTTFQFC EIDLSDIVSP SSLAPFLDEI KKREKQRRRT AKKEESERAK
601: AEVAAAVQAS AMRFEYANSS QSHNDVMFSL DDFEALGNNA GPSTSPRVSE RKLFSDVTRL GFASAQDSPP LRLGTGDANG QSENSRDQGP LATPALSFAS
701: IISSSRAVAA ADNSEMQKAN GTGKKGKKAT RVLLSTGGAR RY
101: SEQGNLGFPV DNFGSVGPYP ERPKMAGSLE ADHLASGSTG HQGNGTQIAA RKNQSVNANH LLNFQYDPIS RPQPRGPRTY PPRRQRKIKP YNKDLFLQAN
201: YKFVVLDTGN YQIESMDPDK MLQWEDIICV RYYSPSEVQC PICLESPLCP QITSCGHIYC FPCILHYLTM GKEDYRGECW KKCPLCFMMV STKDLYTIQI
301: TQVQNFCAGD VATFTLLSRS RNSLTPSIKI SSSESSTADE DPYNVFSKFI VTSDVELSVR EAKLDLSNWL HMADLGLVDD LEKLPYVSAA LEQLEERMKH
401: WIEYRNYGGS PPSKDSFSPG SSFKSRNSFD VNTSHQISGR KISVSDRDMV SGISELSMSP ELSTNSGKGT MSKVNEKCTT TIDSNEHDPY IFYQVSDGQH
501: LILHPLNMRC LLNHFGGSDM LPPRITAKIL ELETVTQSEA IRKRYRFLSH FSLTTTFQFC EIDLSDIVSP SSLAPFLDEI KKREKQRRRT AKKEESERAK
601: AEVAAAVQAS AMRFEYANSS QSHNDVMFSL DDFEALGNNA GPSTSPRVSE RKLFSDVTRL GFASAQDSPP LRLGTGDANG QSENSRDQGP LATPALSFAS
701: IISSSRAVAA ADNSEMQKAN GTGKKGKKAT RVLLSTGGAR RY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.