Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017373_P001 | |
| Zm00001d029743_P001 | |
| Zm00001d051242_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | Zm00001d017373_P001 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | Zm00001d029743_P001 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | Zm00001d051242_P002 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06877 | Sorghum | nucleus | 87.24 | 91.24 |
| TraesCS5D01G139400.2 | Wheat | plastid | 65.72 | 69.48 |
| Os02t0516600-01 | Rice | nucleus, plastid | 66.49 | 69.35 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 64.95 | 68.48 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 64.82 | 68.16 |
| HORVU5Hr1G043380.1 | Barley | plastid | 64.18 | 66.49 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 45.1 | 48.01 |
| KRH06829 | Soybean | nucleus | 40.85 | 44.9 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 40.72 | 43.35 |
| KRG94698 | Soybean | nucleus, plastid | 41.62 | 43.24 |
| CDY28532 | Canola | nucleus, plastid | 40.21 | 42.92 |
| CDY48977 | Canola | nucleus, plastid | 40.46 | 42.9 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 40.59 | 41.61 |
| CDX71433 | Canola | extracellular | 7.09 | 41.04 |
| AT3G26730.1 | Thale cress | plastid | 39.82 | 40.03 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 22.81 | 36.8 |
Protein Annotations
| EntrezGene:100286129 | Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:A0A1D6H959 | ProteinID:AQK71253.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF00097 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR12983 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00084586FD |
| EnsemblPlantsGene:Zm00001d016602 | EnsemblPlants:Zm00001d016602_P001 | EnsemblPlants:Zm00001d016602_T001 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr5:-:169615711..169625655
Molecular Weight (calculated)
85529.5 Da
IEP (calculated)
7.346
GRAVY (calculated)
-0.551
Length
776 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISPHERTG GAYYPRPHNP SPSPQHGSDR RRHGRRSPPA SVSPPGAAAE ASDGGVGSSS NPVVPAIGES INAPEKVVGF IISGEENDTC TQEVGNVSEC
101: HSSEQGDSGL PVDNFGSVGS YPERPKMVGS LQADHLASGS TGLGNGTQIA ARKNQTVNAN HLLNFQYDPI SRPQPRGPRT YLPRRQRKIK PYNKDLFIQA
201: NYKFVVLDTG NYQIDSMDPD KMLQWEDIIC VRYYSPSEVQ CPICLERPLC PQITSCGHIY CFPCILRYLM MGKDDYRGEC WKKCPLCFMM ISSKDLYTIQ
301: ITQVQNVRAG DVVTFTLLSR SRNSLTPSIK SSSSESSTTD EEHYNVFSKF ILTSDVELSV RDAKLDLSNW LHMADLGLVD DLEKLPFVSA ALEQLEEKTK
401: YWIDYRNYGG SPPSKDSFSP GSSFKSRNSF DVNTSQQMSE HKISLSDRDM VNGISELSMS PELSKTSGKG TISKVNEKCT TTIDSNEHDP YTFYQVSDGQ
501: HLILHPLNMR CLLNHFGGSD MLPPRITAKI LELETVTQSE AIRKRYRFLS HFSLTTTFQF CEIDLSDVVS PNSLAPFLDE IKKREKQRKR AAKKGSTDWG
601: SKPPGYLAES SQLQILVYKN CKLKFLEEES ERVKAEVAAA VQASAMRFEY TNSSQSHNDV MFSLDDFEAL GNNAGPSTSP PASERKLFSD VTRLGFASAQ
701: DSPPLRLGTG DANGQSETSR DQGPLATPAL SFASIISSSR AVTAADNSEM QKANGAGKKG KKATRVLLST GGGRRY
101: HSSEQGDSGL PVDNFGSVGS YPERPKMVGS LQADHLASGS TGLGNGTQIA ARKNQTVNAN HLLNFQYDPI SRPQPRGPRT YLPRRQRKIK PYNKDLFIQA
201: NYKFVVLDTG NYQIDSMDPD KMLQWEDIIC VRYYSPSEVQ CPICLERPLC PQITSCGHIY CFPCILRYLM MGKDDYRGEC WKKCPLCFMM ISSKDLYTIQ
301: ITQVQNVRAG DVVTFTLLSR SRNSLTPSIK SSSSESSTTD EEHYNVFSKF ILTSDVELSV RDAKLDLSNW LHMADLGLVD DLEKLPFVSA ALEQLEEKTK
401: YWIDYRNYGG SPPSKDSFSP GSSFKSRNSF DVNTSQQMSE HKISLSDRDM VNGISELSMS PELSKTSGKG TISKVNEKCT TTIDSNEHDP YTFYQVSDGQ
501: HLILHPLNMR CLLNHFGGSD MLPPRITAKI LELETVTQSE AIRKRYRFLS HFSLTTTFQF CEIDLSDVVS PNSLAPFLDE IKKREKQRKR AAKKGSTDWG
601: SKPPGYLAES SQLQILVYKN CKLKFLEEES ERVKAEVAAA VQASAMRFEY TNSSQSHNDV MFSLDDFEAL GNNAGPSTSP PASERKLFSD VTRLGFASAQ
701: DSPPLRLGTG DANGQSETSR DQGPLATPAL SFASIISSSR AVTAADNSEM QKANGAGKKG KKATRVLLST GGGRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.