Factsheet for Solyc06g076050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078550.2.1
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G28840.1	Solyc02g078550.2.1	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077953	Potato	nucleus	95.75	96.61
Solyc11g066020.1.1	Tomato	nucleus	82.55	82.74
VIT_06s0004g04550.t01	Wine grape	nucleus	66.89	74.01
KRH29806	Soybean	nucleus	70.92	70.92
KRH24806	Soybean	nucleus	70.02	70.02
KRH10274	Soybean	nucleus	68.9	69.37
KRH23057	Soybean	nucleus	69.8	69.18
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	67.79	68.86
GSMUA_Achr10P...	Banana	nucleus	66.0	67.35
GSMUA_Achr7P18180_001	Banana	cytosol	66.22	67.12
AT2G28840.1	Thale cress	cytosol	68.23	66.89
CDX83303	Canola	cytosol	66.22	65.05
Bra035664.1-P	Field mustard	nucleus	65.32	64.75
Bra011923.1-P	Field mustard	nucleus	66.0	64.55
CDY47891	Canola	cytosol	65.55	64.4
CDY15789	Canola	cytosol	65.55	64.25
Os05t0112000-01	Rice	cytosol	64.65	64.22
CDX77214	Canola	cytosol	64.88	64.02
CDX95759	Canola	cytosol	65.77	63.09
EES18892	Sorghum	nucleus	65.32	62.8
TraesCS1D01G035300.1	Wheat	cytosol	62.64	62.22
TraesCS1A01G034300.2	Wheat	cytosol	62.19	61.64
CDY31737	Canola	cytosol	64.88	60.8
Solyc09g010690.2.1	Tomato	nucleus	60.85	60.31
TraesCS4B01G207400.1	Wheat	cytosol	60.18	60.18
TraesCS4D01G208300.1	Wheat	cytosol	59.73	59.07
TraesCS4A01G097000.2	Wheat	cytosol	59.96	59.03
Bra000480.1-P	Field mustard	plastid	64.21	58.22
TraesCS1B01G050200.3	Wheat	cytosol	63.09	58.02
GSMUA_Achr6P33430_001	Banana	nucleus	63.76	57.81
EER92481	Sorghum	nucleus	56.6	56.47
TraesCS3D01G537900.1	Wheat	cytosol	57.05	55.68
TraesCS3A01G532700.1	Wheat	cytosol	57.49	55.63
Os01t0974400-01	Rice	cytosol	55.48	55.61
Os03t0275300-01	Rice	nucleus	57.27	55.05
TraesCS3B01G609500.1	Wheat	cytosol	57.05	54.96
EES02150	Sorghum	cytosol	56.82	52.48
TraesCS7D01G304700.1	Wheat	cytosol	21.92	48.04
Zm00001d025843_P001	Maize	plastid	20.58	44.66
HORVU1Hr1G043970.3	Barley	plastid	23.49	37.1
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	29.75	26.03
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	29.53	25.68

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	UniProt:G8Z262	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:GQ261240
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023
PFAM:PF12796	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g076050.2	EnsemblPlants:Solyc06g076050.2.1
UniParc:UPI000243C63E	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

Hop-interacting protein THI033 [Source:UniProtKB/TrEMBL;Acc:G8Z262]

Coordinates

chr6:+:47223728..47226315

Molecular Weight (calculated)

48855.6 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.155

Length

447 amino acids

Sequence
(BLAST)

001: MGQGFSCGTS DEHGLFTAVQ CGDLETVKAL FERNPSLVHH STVYDRQSAL HIAAANGQIE VVSMLLDMSV KPDLLNRYKQ TPLMLAAMHG KISCVQKLIE
101: AGANILMFDS LNGRTCLHYA AYYGYSDCLK TILFAARTSH IASSWGYARF VNVNDGKGAT PLHLAARQRR ADCVHILLDN GALACASTDG YGFPGSTPLH
201: LAARAGSLDC IRELLAWGAE RLQRDDLGRI PYTIALRYKH GACAALLNPS SAEPLVWPSP LKFISELNKE AKHLLECALM EANKEREKNI LKGTTYSPPS
301: PTNSDNEMDD NISEVNETEI CCICFDQVCT IQVQDCGHQM CAHCVLALCC HKKPNPTTTS PIVPVCPFCR SNIVQLDVIK LEKDDGTSHD IVSPSKLRKS
401: RRSRNFSEGS SSFKGLSAVS SFGRMVGRGS GRIAAENEYI DKPIILD

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.