Factsheet for Os01t0974400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0639000-01
Os04t0529500-02
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Os10t0114400-01	AT2G01950.1	19000166
AT2G28840.1	Os02t0639000-01	AT4G21670.1	18541146
AT2G28840.1	Os04t0529500-02	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041951_P001	Maize	cytosol	65.25	69.45
TraesCS3B01G609500.1	Wheat	cytosol	70.18	67.46
TraesCS3D01G537900.1	Wheat	cytosol	69.06	67.25
TraesCS3A01G532700.1	Wheat	cytosol	69.06	66.67
Os05t0112000-01	Rice	cytosol	65.92	65.33
EES02150	Sorghum	cytosol	67.04	61.78
VIT_06s0004g04550.t01	Wine grape	nucleus	54.26	59.9
GSMUA_Achr10P...	Banana	nucleus	57.62	58.68
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	57.4	58.18
GSMUA_Achr7P18180_001	Banana	cytosol	57.17	57.82
KRH29806	Soybean	nucleus	57.62	57.49
PGSC0003DMT400077953	Potato	nucleus	56.28	56.66
KRH10274	Soybean	nucleus	56.28	56.53
PGSC0003DMT400001171	Potato	nucleus	56.5	56.5
KRH23057	Soybean	nucleus	56.95	56.32
KRH24806	Soybean	nucleus	56.28	56.15
Solyc11g066020.1.1	Tomato	nucleus	56.05	56.05
Os03t0275300-01	Rice	nucleus	57.85	55.48
Solyc06g076050.2.1	Tomato	nucleus	55.61	55.48
TraesCS7D01G304700.1	Wheat	cytosol	25.11	54.9
KRG99867	Soybean	nucleus	54.26	54.88
HORVU3Hr1G116350.2	Barley	plastid	56.95	54.86
VIT_08s0007g00200.t01	Wine grape	nucleus	54.48	54.73
CDY47891	Canola	cytosol	55.83	54.73
CDY15789	Canola	cytosol	55.83	54.61
Bra011923.1-P	Field mustard	nucleus	55.83	54.49
AT2G28840.1	Thale cress	cytosol	55.61	54.39
KRH46816	Soybean	cytosol	53.36	54.34
CDX83303	Canola	cytosol	54.71	53.63
Bra035664.1-P	Field mustard	nucleus	54.04	53.44
CDX77214	Canola	cytosol	54.26	53.42
CDX95759	Canola	cytosol	54.71	52.36
Solyc09g010690.2.1	Tomato	nucleus	52.02	51.44
CDY31737	Canola	cytosol	54.04	50.52
GSMUA_Achr6P33430_001	Banana	nucleus	55.83	50.51
Bra000480.1-P	Field mustard	plastid	53.36	48.28
PGSC0003DMT400023028	Potato	nucleus	52.47	45.09
KRH46162	Soybean	cytosol	34.53	44.51
Os06t0128600-01	Rice	cytosol, mitochondrion	5.61	38.46
Os06t0128700-01	Rice	cytosol	9.42	33.6
Os10t0521600-01	Rice	cytosol	17.04	31.41
Os08t0258200-02	Rice	nucleus	28.48	25.66
Os02t0791200-01	Rice	mitochondrion	27.8	23.35

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:4324295	EMBL:AK106014	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:BAB63825.1	ProteinID:BAF07468.1	ProteinID:BAS76454.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlantsGene:Os01g0974400	EnsemblPlants:Os01t0974400-01
PFAM:PF00023	PFAM:PF12796	PFAM:PF13637	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF20	UniProt:Q94CT7	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI00000A9B2D	RefSeq:XP_015612477.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING finger protein OsRFPHC-7, RING-HC protein 7Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0974400-01)

Coordinates

chr1:+:43063740..43065432

Molecular Weight (calculated)

47704.1 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.098

Length

446 amino acids

Sequence
(BLAST)

001: MGHGLSCSRD TDEYDLFRAA QLGDIHALSA LLAADPALAR RATVYDRFTA LHIAAANGRL QVLSMLLDRD GDVDVLSRKK QTPLMVAAMR GNTECVVRLL
101: RGGANVLTFD SPRARTCLHH AAYYGHAECL QAILGAAAQA QGPVAASWGF ARFVNVRDER GATPLHLAAR HARASCVRLL LDKGAIVSAP TAVYGFPGST
201: ALHLAARAGS MECIRELLAW GADRLQRDSA GRIAYAVAMR RGHRACAALL NPAAAEPIVW PSPLKFIGEL EADAKALLEA ALMEANRERE KRILHGSDIN
301: IKGGDEEEES EDEEEACNIC FEQACSMEVK ECGHQMCAAC TLAICCHSKP NPKTLLLHPP ACPFCRTTIS RLVVATTNSN KTNSRRRSRS RSSSFKGGLS
401: SAMGSFSRIG RGSGRLVVDG SSVGELADKP DHDFSSVAAA AAICDT

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.