Factsheet for GSMUA_Achr1P10240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04900_001	Banana	nucleus	67.34	62.42
GSMUA_Achr4P02080_001	Banana	nucleus	70.5	62.35
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	68.47	59.73
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	66.89	58.7
HORVU7Hr1G029900.6	Barley	cytosol	62.39	58.19
KRH18952	Soybean	cytosol, nucleus, plastid	66.22	57.87
TraesCS7D01G147400.1	Wheat	cytosol	62.61	57.8
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	66.89	57.78
TraesCS7A01G145900.1	Wheat	cytosol	62.39	57.59
KRH02947	Soybean	cytosol, nucleus, plastid	65.99	57.45
TraesCS7B01G048300.1	Wheat	cytosol	62.16	57.38
OQU80200	Sorghum	nucleus	62.16	57.14
GSMUA_Achr11P...	Banana	plastid	33.78	56.18
Bra020414.1-P	Field mustard	plastid	62.61	55.05
CDY02760	Canola	cytosol	62.61	54.94
CDY51284	Canola	cytosol	61.71	54.37
Os08t0258200-02	Rice	nucleus	60.59	54.34
AT5G57740.1	Thale cress	cytosol	61.94	54.13
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.49	53.01
Zm00001d050184_P010	Maize	plasma membrane	62.39	52.76
CDY25888	Canola	extracellular, vacuole	51.13	49.24
VIT_18s0001g14720.t01	Wine grape	cytosol	9.01	44.44
GSMUA_Achr11P...	Banana	cytosol	50.23	43.3
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	43.92	42.67
CDY65199	Canola	cytosol, mitochondrion, nucleus	17.34	35.81
Bra020415.1-P	Field mustard	mitochondrion	16.22	33.96
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	29.05	29.32
GSMUA_Achr11P...	Banana	mitochondrion	19.14	29.31
GSMUA_Achr7P18180_001	Banana	cytosol	27.48	27.66
GSMUA_Achr10P...	Banana	nucleus	26.8	27.17
GSMUA_Achr6P33430_001	Banana	nucleus	26.35	23.73

Protein Annotations

Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G10240_001	EnsemblPlants:GSMUA_Achr1P10240_001
EnsemblPlants:GSMUA_Achr1T10240_001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
UniProt:M0RYN3	PFAM:PF12796	PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI000295362C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:

Description

Probable E3 ubiquitin-protein ligase XBOS32 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10240_001]

Coordinates

chr1:-:7722355..7726187

Molecular Weight (calculated)

48097.9 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.001

Length

444 amino acids

Sequence
(BLAST)

001: MGFLSVIGNS FGCSTSGERL LSAAREGDLE EAKALVEYNP RLARYSTFGV NNSPLHFSAS HGHHEIVSVL VETGANINLR NYSGQTPLML ACLHGHWEVV
101: QILILFKANI HKKDFLSGGT ALHFAALNGH NRCIRLLLAD CVPSSPQFWN TMRGRLASED SLVDFDEVDL CKIVNRRADG GITALHLAAL NGHAESVQLL
201: LDLGACVSEV TVNDGATIDL IGAGSTPLHY AACGGNAVCC QVLIARGASL TAENANGWTP LMVARSWHKN WLESILRKEP EGQIAVLPSK YLALPLMSIV
301: KIARECGWRK TKHEPTCVDP CAICLESKCT VAAQGCHHEF CTTCALYLCS TNNTSATVHG PPGSVACPLC RRAIVSFIKL PGTTNMTKDL VRANLSRSLS
401: VTHSTTRSNP ATSKAKQITK PDFQYKQIKQ RSSSFRSLGF QQFL

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.