CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18952	Soybean	cytosol, nucleus, plastid	95.69	96.06
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	71.57	72.13
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	70.78	70.23
GSMUA_Achr4P02080_001	Banana	nucleus	66.27	67.33
GSMUA_Achr3P04900_001	Banana	nucleus	62.75	66.81
GSMUA_Achr1P10240_001	Banana	nucleus	57.45	65.99
CDY02760	Canola	cytosol	64.71	65.22
Bra020414.1-P	Field mustard	plastid	64.51	65.15
AT5G57740.1	Thale cress	cytosol	64.31	64.57
CDY51284	Canola	cytosol	63.53	64.29
EES05937	Sorghum	nucleus	62.55	64.19
TraesCS6D01G335000.2	Wheat	cytosol	61.76	63.0
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.53	62.91
TraesCS6A01G352300.1	Wheat	cytosol	61.57	62.8
TraesCS6B01G385200.1	Wheat	cytosol	61.57	62.67
HORVU7Hr1G029900.6	Barley	cytosol	56.86	60.92
TraesCS7B01G048300.1	Wheat	cytosol	56.67	60.08
TraesCS7A01G145900.1	Wheat	cytosol	56.47	59.88
TraesCS7D01G147400.1	Wheat	cytosol	56.47	59.88
OQU80200	Sorghum	nucleus	56.08	59.21
Os02t0791200-01	Rice	mitochondrion	61.37	58.95
Os08t0258200-02	Rice	nucleus	56.67	58.38
CDY25888	Canola	extracellular, vacuole	52.75	58.35
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	61.37	56.4
Zm00001d050184_P010	Maize	plasma membrane	55.88	54.29
VIT_18s0001g14720.t01	Wine grape	cytosol	9.02	51.11
KRH09105	Soybean	nucleus	51.18	51.08
KRH38558	Soybean	nucleus	50.78	50.68
KRG91461	Soybean	cytosol, nucleus, plastid	49.61	49.41
KRH35355	Soybean	nucleus	49.41	49.22
CDY65199	Canola	cytosol, mitochondrion, nucleus	17.65	41.86
Bra020415.1-P	Field mustard	mitochondrion	16.86	40.57
KRH10274	Soybean	nucleus	25.49	29.28
KRH23057	Soybean	nucleus	25.69	29.05
KRH29806	Soybean	nucleus	24.9	28.41
KRH24806	Soybean	nucleus	24.12	27.52
KRH46162	Soybean	cytosol	18.43	27.17
KRG99867	Soybean	nucleus	22.94	26.53
KRH46816	Soybean	cytosol	22.55	26.26

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100813190	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02010331	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_17G068400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1MSW5	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:KRH02947	ProteinID:KRH02947	ProteinID:KRH02947.1	ProteinID:KRH02948.1	PFAM:PF12796	PRINTS:PR01415
ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22
SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000233EC29	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:5332798..5338912

Molecular Weight (calculated)

55307.0 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.120

Length

510 amino acids

Sequence
(BLAST)

001: MKFLSIVGNS FGCSASGERL VSAARDGDIQ EAKALLEYNP RLARYSTFGV RNSPLHYSAA HGHHEIVNLL LESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: QTLIIFNANI HKADYLNGGT VLHLAALNGH TRCIRLILAD YIPSVPNFWN ALQTGDHKSI SEFDQSGLCE VINRTADGGI TALHMAVLNG HAESVQLLLD
201: LGASVSEVTV EDGTTIDLIG SGSTPLHYAA CGGNQQCCQL LIAKGANLTA ENANGWTPLM VARSWRRDWL EDILKTPPED PLQVLPSPYI SLPLMSIVRI
301: ARECGWRTSD LAPCLDPCAV CLERKCMVAV EGCDHEFCTQ CAMYLCSTNS TSTTTTGPPG SIACPLCRHG IVSFVKLPDA RPLHKEMQRT SNLSLTLCTC
401: SSEVLGDSSD MTTPFCKPTS SRGSKSSSPS RSFRSMSCQG FPSFRMNPSL CLGADVSPSL VPCTVSRNVR NHLARCSGST FRRSSSQTER RKSSWFCSLN
501: QSVATGGNRC

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.