Factsheet for VIT_11s0037g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	77.6	78.06
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	76.03	75.29
GSMUA_Achr4P02080_001	Banana	nucleus	71.32	72.31
GSMUA_Achr3P04900_001	Banana	nucleus	67.58	71.82
GSMUA_Achr1P10240_001	Banana	nucleus	59.73	68.47
EES05937	Sorghum	nucleus	66.01	67.61
TraesCS6D01G335000.2	Wheat	cytosol	66.21	67.4
TraesCS6A01G352300.1	Wheat	cytosol	65.82	67.0
TraesCS6B01G385200.1	Wheat	cytosol	65.82	66.87
Os02t0791200-01	Rice	mitochondrion	65.62	62.9
HORVU7Hr1G029900.6	Barley	cytosol	58.15	62.18
TraesCS7B01G048300.1	Wheat	cytosol	58.35	61.75
TraesCS7A01G145900.1	Wheat	cytosol	58.15	61.54
TraesCS7D01G147400.1	Wheat	cytosol	58.15	61.54
OQU80200	Sorghum	nucleus	58.35	61.49
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	65.42	60.0
Os08t0258200-02	Rice	nucleus	57.37	58.99
Zm00001d050184_P010	Maize	plasma membrane	58.55	56.76
VIT_16s0100g00690.t01	Wine grape	nucleus	51.67	51.37
VIT_18s0001g14720.t01	Wine grape	cytosol	9.04	51.11
VIT_06s0004g04550.t01	Wine grape	nucleus	22.99	28.96
VIT_08s0007g00200.t01	Wine grape	nucleus	24.36	27.93

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100263815	wikigene:100263815	MapMan:19.2.2.1.5.3.2	EMBL:AM461543	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN70237	ProteinID:CAN70237.1	ProteinID:CBI36630	ProteinID:CBI36630.3
UniProt:D7U1L4	EMBL:FN596499	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100263815	wikigene:LOC100263815	PFAM:PF12796
ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI00015C93EF	ArrayExpress:VIT_11s0037g01410	EnsemblPlantsGene:VIT_11s0037g01410
EnsemblPlants:VIT_11s0037g01410.t01	unigene:Vvi.21823	RefSeq:XP_002269428	RefSeq:XP_002269428.1	InterPro:Znf_RING	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:10997336..11004832

Molecular Weight (calculated)

55216.1 Da

IEP (calculated)

7.959

GRAVY (calculated)

-0.041

Length

509 amino acids

Sequence
(BLAST)

001: MRFLSIVGNS FGCSASGERL VSAARDGDLQ EAKALLEYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL LVSGVDINLR NYRGQTALMQ ACQHGHWEVV
101: QTLVLFRANI HRADYLNGGT ALHLAALNGH SRCIRLLLAD YIPSIPDLWN ILRKRSNREE SISEFDEGAL CQVINRPADG GITALHMAAL NGHVETLQLL
201: LDLGASLSEV TVEDGTTIDL IGAGSTPLHY AACGGNAQCC QILIARGAYL AAENANGWTP LMVARSWHRG WLEEILSTQP EVQSRTISSS YLSLPLMSIV
301: KIARECGWRN NDSLPTCQDP CVVCLERKCT VAAQGCDHEF CTKCALYLCS MNSSSTVSQC PLGSIACPLC RNGIVSFVKL PGTKPLVKEI ARTSLSLSFC
401: TCSGEGPEPT SLTTPFCKPD FHCSRISPLG SSFRSLSCQR FSSVKLNSSL CMGAPDTSPS LVPCTVDRNL RNHLARCSRS GLRRSASHSE SRRSWFSALN
501: QYVATGSGC

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.