Factsheet for GSMUA_Achr10P00720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G362900.4	Wheat	cytosol, nucleus	59.97	51.28
TraesCS3A01G370000.2	Wheat	mitochondrion	60.3	49.12
Os01t0857000-01	Rice	cytosol, nucleus, plastid	60.8	48.41
TraesCS3B01G401900.2	Wheat	mitochondrion	59.14	47.34
KXG33725	Sorghum	cytosol, nucleus, plastid	57.97	46.66
Zm00001d042804_P001	Maize	plastid	57.48	44.36
AT5G01270.2	Thale cress	nucleus	53.49	41.6
GSMUA_Achr11P...	Banana	extracellular	12.62	41.53
VIT_08s0007g02130.t01	Wine grape	nucleus	58.14	41.03
Solyc09g014440.2.1	Tomato	cytosol	54.49	40.59
KRH49327	Soybean	nucleus	56.15	40.29
KRH00194	Soybean	nucleus	56.31	40.21
CDY11208	Canola	nucleus	52.49	40.0
Bra005692.1-P	Field mustard	nucleus	52.33	39.82
CDX80779	Canola	nucleus	52.16	39.75
GSMUA_Achr11P...	Banana	nucleus	48.84	31.72
GSMUA_Achr8P14120_001	Banana	nucleus	48.17	30.56
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006464	GO:GO:0006950
GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009733	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
GO:GO:0019538	GO:GO:0040007	GO:GO:0048589	GO:GO:0070940	EnsemblPlantsGene:GSMUA_Achr10G00720_001	EnsemblPlants:GSMUA_Achr10P00720_001
EnsemblPlants:GSMUA_Achr10T00720_001	InterPro:HAD-like_sf	InterPro:IPR004274	InterPro:IPR014720	UniProt:M0RE99	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR23081	PANTHER:PTHR23081:SF10	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768
SUPFAM:SSF56784	UniParc:UPI0002966781	InterPro:dsRBD_dom	SEG:seg	:	:

Description

RNA polymerase II C-terminal domain phosphatase-like 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G00720_001]

Coordinates

chr10:+:1285154..1293888

Molecular Weight (calculated)

67604.5 Da

IEP (calculated)

5.482

GRAVY (calculated)

-0.393

Length

602 amino acids

Sequence
(BLAST)

001: MGRRVGISCK VYHGDMFLGE AEAFPITNNN SSSKGQGLPF PNSSEIRIDH LAPPSERCPP LSVLQTISPF AVRCKVQAKS LSELSLLHRL YLSCFQERKS
101: AVVVIGNEEL HLVAMPSKVE KVSCFWCCSV QTGRYTSCLG MLNLRCLAIV FDLDETLIVA NTMKSFEDRI EALSRRIDGE NDPIRVSGMS AELKRYIEDK
201: DLLKQYIEMD TVSEGGRSIS AQNEEVPPVP GIQEKIVRPI IRLLERNIVL TRINPENRDT SVIVRLRPAW EDLRSYLTAK GRRRFEVYVC LKKSLQHVFQ
301: DSVCHPRMAM VIDDRLQVWD DKDQPRVHVV PPFTPYYAPQ AEMANAVPVL CVARNVACNV RGGFFKEFDE NLLQKIYEVN YENEIVDLPS APDVSNYLIS
401: EDVNSAQNNN REGPVVEGMT GSEAEHRMNR PVNISDERQT KPQTLSNRSS PDDEMLVDQP FASNRNLCNE SGQSNLLAPS MFISVLQEIG RRCDSKVDFR
501: FINGSNKDLQ YSVEVLFSSE KIGIGMGRTM KEAQSQAAEN ALRNLARDYV SFIAPVASGV DTEITKHPCG NENGFLKENY SSQDESAKKE DLPVASTSEN
601: SK

Best Arabidopsis Sequence Match ( AT5G01270.1 )
(BLAST)

001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL

Arabidopsis Description

CPL2Carboxyl-terminal domain (Ctd) phosphatase-like 2 [Source:UniProtKB/TrEMBL;Acc:F4K802]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.