Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G362900.4 | Wheat | cytosol, nucleus | 78.04 | 83.81 |
| TraesCS3A01G370000.2 | Wheat | mitochondrion | 79.23 | 81.06 |
| TraesCS3B01G401900.2 | Wheat | mitochondrion | 78.44 | 78.86 |
| KXG33725 | Sorghum | cytosol, nucleus, plastid | 76.72 | 77.54 |
| Zm00001d042804_P001 | Maize | plastid | 73.68 | 71.41 |
| GSMUA_Achr10P... | Banana | cytosol | 48.41 | 60.8 |
| AT5G01270.2 | Thale cress | nucleus | 46.83 | 45.74 |
| VIT_08s0007g02130.t01 | Wine grape | nucleus | 48.81 | 43.26 |
| Bra005692.1-P | Field mustard | nucleus | 45.11 | 43.11 |
| CDY11208 | Canola | nucleus | 44.97 | 43.04 |
| CDX80779 | Canola | nucleus | 44.71 | 42.78 |
| Solyc09g014440.2.1 | Tomato | cytosol | 45.11 | 42.2 |
| KRH49327 | Soybean | nucleus | 46.03 | 41.48 |
| KRH00194 | Soybean | nucleus | 46.16 | 41.4 |
| Os02t0639000-01 | Rice | cytosol | 43.39 | 34.89 |
| Os04t0529500-02 | Rice | extracellular | 42.59 | 34.51 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | EntrezGene:4324753 | ProteinID:BAD82045.1 | ProteinID:BAD82316.1 |
| ProteinID:BAF06764.1 | ProteinID:BAS75303.1 | ncoils:Coil | ProteinID:EEE55696.1 | InterPro:FCP1_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 | GO:GO:0016591 | GO:GO:0016787 | GO:GO:0016791 |
| GO:GO:0019538 | GO:GO:0040007 | GO:GO:0048589 | GO:GO:0070940 | InterPro:HAD-like_sf | InterPro:IPR004274 |
| InterPro:IPR014720 | EnsemblPlantsGene:Os01g0857000 | EnsemblPlants:Os01t0857000-01 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 |
| PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF10 | UniProt:Q5N890 | SMART:SM00358 | SMART:SM00577 |
| SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000049E955 | RefSeq:XP_015620273.1 | InterPro:dsRBD_dom | SEG:seg |
Description
-Double-stranded RNA-binding-like domain containing protein. (Os01t0857000-01);Similar to CPL2 (CTD phosphatase-like 2); double-stranded RNA binding. (Os01t0857000-02)
Coordinates
chr1:-:37023827..37031493
Molecular Weight (calculated)
83823.0 Da
IEP (calculated)
5.423
GRAVY (calculated)
-0.219
Length
756 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPRAPPQA AVPGGGAGAT AGGVTMRMFH GDVFLGEAEV FPMKQGAEGS LPFPSNEIRI SHLSPTSERC PPLAILQTIA PFSVRCKLQA KLMPPHPSLH
101: RLYLTCFNEY KSAVVVVGDE ELHLVAMPSK VEKVPCFWCC SVRSGIYAAS VGMLNLRCLA IVFDLDETLI VANTMKSFED RIEMLSRRMD IEDDPVRIAG
201: MSAEIKRYIE DRELLKEFID TDTVTDNGRI VGTQKEEVLP ISGGQERVLR PVIRLPERNA ILTRINPEVR DTSVFVKLRP AWEDLRSYLT AKGRKRFEVY
301: VCTMAERDYA LEMWRLLDPE ANLISSHNLA ERVVCVKSGS KKCLQNVFKD KGCHPKMAMV IDDRLQVWDE KDQPRVHVVP AYTPYYAPQA EMANAVPVLC
401: VARNVACNVR GGFFREFDEN LLRKVFELMY ENELLDLPYA PDVGDYLVCE DTNFAPNNKD VAPIPEGMSG AEVGKRLNGL AYPRDQKQIP SSTRLSDDDG
501: VALRGIPGGT NIQSNGGSLA TTPSLFVTVL QEIGRLCESR VEFRSTVSSG KNMQFSVEVL FSNEKIGIGI GKTRDEAQVL AAEKALQNLE SNYLSFMAPV
601: AGVLNKDVNK PPGSGNGFLE DITLSEDISM EEPSGSTLKE QDHSKALDRL SSVISLIREL CLEDQHVVFR DQVRDSGSAL NGEYHFQAEL GGQILGRGID
701: LNKDFAKLQA AEEALKTLKT TTDPQIKKHL RPMQQLNFPL YPTEVSLIML KCEASC
101: RLYLTCFNEY KSAVVVVGDE ELHLVAMPSK VEKVPCFWCC SVRSGIYAAS VGMLNLRCLA IVFDLDETLI VANTMKSFED RIEMLSRRMD IEDDPVRIAG
201: MSAEIKRYIE DRELLKEFID TDTVTDNGRI VGTQKEEVLP ISGGQERVLR PVIRLPERNA ILTRINPEVR DTSVFVKLRP AWEDLRSYLT AKGRKRFEVY
301: VCTMAERDYA LEMWRLLDPE ANLISSHNLA ERVVCVKSGS KKCLQNVFKD KGCHPKMAMV IDDRLQVWDE KDQPRVHVVP AYTPYYAPQA EMANAVPVLC
401: VARNVACNVR GGFFREFDEN LLRKVFELMY ENELLDLPYA PDVGDYLVCE DTNFAPNNKD VAPIPEGMSG AEVGKRLNGL AYPRDQKQIP SSTRLSDDDG
501: VALRGIPGGT NIQSNGGSLA TTPSLFVTVL QEIGRLCESR VEFRSTVSSG KNMQFSVEVL FSNEKIGIGI GKTRDEAQVL AAEKALQNLE SNYLSFMAPV
601: AGVLNKDVNK PPGSGNGFLE DITLSEDISM EEPSGSTLKE QDHSKALDRL SSVISLIREL CLEDQHVVFR DQVRDSGSAL NGEYHFQAEL GGQILGRGID
701: LNKDFAKLQA AEEALKTLKT TTDPQIKKHL RPMQQLNFPL YPTEVSLIML KCEASC
001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL VLRK
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL VLRK
Arabidopsis Description
CPL2Carboxyl-terminal domain (Ctd) phosphatase-like 2 [Source:UniProtKB/TrEMBL;Acc:F4K802]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.