Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g02130.t01 | Wine grape | nucleus | 59.78 | 56.62 |
| GSMUA_Achr10P... | Banana | cytosol | 40.59 | 54.49 |
| KRH00194 | Soybean | nucleus | 55.32 | 53.02 |
| AT5G01270.2 | Thale cress | nucleus | 50.37 | 52.58 |
| KRH49327 | Soybean | nucleus | 54.33 | 52.32 |
| Bra005692.1-P | Field mustard | nucleus | 49.26 | 50.32 |
| CDX80779 | Canola | nucleus | 49.13 | 50.25 |
| CDY11208 | Canola | nucleus | 48.89 | 50.0 |
| TraesCS3D01G362900.4 | Wheat | cytosol, nucleus | 43.32 | 49.72 |
| TraesCS3A01G370000.2 | Wheat | mitochondrion | 43.69 | 47.77 |
| TraesCS3B01G401900.2 | Wheat | mitochondrion | 43.32 | 46.54 |
| KXG33725 | Sorghum | cytosol, nucleus, plastid | 42.2 | 45.59 |
| Os01t0857000-01 | Rice | cytosol, nucleus, plastid | 42.2 | 45.11 |
| Zm00001d042804_P001 | Maize | plastid | 40.97 | 42.44 |
| Solyc02g078550.2.1 | Tomato | nucleus | 44.06 | 37.32 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | InterPro:FCP1_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006970 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009733 | GO:GO:0009987 | GO:GO:0016591 | GO:GO:0016787 | GO:GO:0016791 | GO:GO:0019538 |
| GO:GO:0040007 | GO:GO:0048589 | GO:GO:0070940 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 |
| UniProt:K4CRS1 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 |
| PANTHER:PTHR23081:SF10 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | EnsemblPlantsGene:Solyc09g014440.2 |
| EnsemblPlants:Solyc09g014440.2.1 | UniParc:UPI000276B910 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
RNA polymerase II C-terminal domain phosphatase-like 2 [Source:Projected from Arabidopsis thaliana (AT5G01270) UniProtKB/Swiss-Prot;Acc:Q5YDB5]
Coordinates
chr9:-:6049484..6059985
Molecular Weight (calculated)
90426.2 Da
IEP (calculated)
6.602
GRAVY (calculated)
-0.362
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRLGFKSLV FQGETCLGEL DTIPVKDQNF QFPNNEIRID HISTNSERVH PIAVLRTISS PVRCKLEPNS NSAPTGSEKS PLITLHSSCY YDLKTAVVFL
101: GEEEIHLVAM ASKQKKFPCF WCYSVPVGLY SACLQMLNMR CLSIVFDLDE TLIVANTMKS FDDRIEALRG WLAREMDPIR SSGMSAELRR YMEDRALLKQ
201: YLESDSVVDC GIVYRAQKEE VLPLSEGQEG VVRPVIRLGD KNVVLTRINP ENRDTSVLVR LRPAWEELRT YLTAKGRKRF EVYVCTMAER DYALEIWRLL
301: DPGSHLINAN QLMDRVVCVR SGAKKSLLTV FRNGICHPKL AMVIDDRLKV WDDKDQPRVH VVPAFAPYYA PLAEMANAVP VLCVARNVAC DVRARFFKEF
401: DEGLLRKICE IFYEDEAVNL PSAPDVSNYL MSEDAGFASC GIPAPIPEGM YGPEVTQRLN QQEGKVNMNS APVFMSNNPD MKPGSSQLMV GIAANAPAQS
501: VRPIQPSEKP SLLGAPFRRD NSFSEADGDG KRRHPILNPS QDMRYRGSAE PPLLPRVPQK PPILPIPPHG GWLVEDDLNK GHMGGRSPGI FQESDASRYA
601: KQRGHQNFLS QGATNMMLPS YASAGKNGEV NFRHEMHRLI HQTEGRFSQH QSLFNNREPQ LEAGRMNILP SLATGVLQEI GRLCNSKVEF RPVVSTSEEL
701: QFSVEVFFIG ERVGVGMGKT RKDAQQQAAE NALRNMAGNY VSYITSHPLA VDKDFDKISV ENENGFLWDT VNHVDEPSVD DRLPQVNVSE VGVNGDASHD
801: RSLNSLKT
101: GEEEIHLVAM ASKQKKFPCF WCYSVPVGLY SACLQMLNMR CLSIVFDLDE TLIVANTMKS FDDRIEALRG WLAREMDPIR SSGMSAELRR YMEDRALLKQ
201: YLESDSVVDC GIVYRAQKEE VLPLSEGQEG VVRPVIRLGD KNVVLTRINP ENRDTSVLVR LRPAWEELRT YLTAKGRKRF EVYVCTMAER DYALEIWRLL
301: DPGSHLINAN QLMDRVVCVR SGAKKSLLTV FRNGICHPKL AMVIDDRLKV WDDKDQPRVH VVPAFAPYYA PLAEMANAVP VLCVARNVAC DVRARFFKEF
401: DEGLLRKICE IFYEDEAVNL PSAPDVSNYL MSEDAGFASC GIPAPIPEGM YGPEVTQRLN QQEGKVNMNS APVFMSNNPD MKPGSSQLMV GIAANAPAQS
501: VRPIQPSEKP SLLGAPFRRD NSFSEADGDG KRRHPILNPS QDMRYRGSAE PPLLPRVPQK PPILPIPPHG GWLVEDDLNK GHMGGRSPGI FQESDASRYA
601: KQRGHQNFLS QGATNMMLPS YASAGKNGEV NFRHEMHRLI HQTEGRFSQH QSLFNNREPQ LEAGRMNILP SLATGVLQEI GRLCNSKVEF RPVVSTSEEL
701: QFSVEVFFIG ERVGVGMGKT RKDAQQQAAE NALRNMAGNY VSYITSHPLA VDKDFDKISV ENENGFLWDT VNHVDEPSVD DRLPQVNVSE VGVNGDASHD
801: RSLNSLKT
001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL
Arabidopsis Description
CPL2Carboxyl-terminal domain (Ctd) phosphatase-like 2 [Source:UniProtKB/TrEMBL;Acc:F4K802]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.