CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX93488
CDX94046
CDX94957
CDX98696
CDY20678
CDY31070
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	CDX93488	AT1G09700.1	23141542
AT2G27100.1	CDX94957	AT1G09700.1	23141542
AT2G27100.1	CDY20678	AT1G09700.1	23141542
AT2G27100.1	CDY31070	AT1G09700.1	23141542
AT2G27100.1	CDX76438	AT4G21670.1	23141542
AT2G27100.1	CDX79083	AT4G21670.1	23141542
AT2G27100.1	CDX94046	AT4G21670.1	23141542
AT2G27100.1	CDX98696	AT4G21670.1	23141542
AT2G27100.1	CDY31421	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034322.1-P	Field mustard	nucleus	97.54	97.25
CDY04478	Canola	nucleus	85.8	83.38
CDX71472	Canola	nucleus	84.64	83.07
AT2G27100.1	Thale cress	nucleus	81.01	77.64
GSMUA_Achr7P19610_001	Banana	nucleus	49.71	63.28
GSMUA_Achr6P01800_001	Banana	nucleus	48.84	62.29
VIT_06s0009g01570.t01	Wine grape	nucleus	64.64	60.68
Solyc01g009090.2.1	Tomato	nucleus	63.62	58.69
KRH56284	Soybean	endoplasmic reticulum	59.71	57.7
KRH62750	Soybean	nucleus	59.13	57.38
HORVU7Hr1G052570.1	Barley	nucleus	43.62	57.12
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	37.68	57.02
KRH44717	Soybean	nucleus	58.84	56.62
GSMUA_Achr10P...	Banana	nucleus	59.42	55.86
HORVU0Hr1G020790.1	Barley	nucleus	35.51	55.06
EES15338	Sorghum	nucleus	49.42	53.12
TraesCS7B01G323700.2	Wheat	nucleus	53.77	53.0
TraesCS7D01G416100.1	Wheat	nucleus	53.62	52.86
TraesCS7A01G423200.1	Wheat	nucleus	53.62	52.86
Zm00001d049767_P001	Maize	extracellular, nucleus	47.97	52.71
EER90312	Sorghum	nucleus	54.06	52.31
TraesCS6A01G119000.1	Wheat	nucleus	37.68	52.0
HORVU7Hr1G097860.2	Barley	plastid	52.17	51.95
Os08t0517300-01	Rice	plastid	48.41	51.62
TraesCS7B01G150500.1	Wheat	nucleus	47.97	51.48
TraesCS7A01G254300.1	Wheat	nucleus	47.83	51.32
TraesCS7D01G252800.1	Wheat	nucleus	47.68	51.17
HORVU6Hr1G021620.2	Barley	nucleus	39.42	50.84
Os06t0698859-01	Rice	nucleus	53.19	50.76
Zm00001d036495_P001	Maize	nucleus	53.04	50.69
Zm00001d014655_P001	Maize	nucleus, plastid	54.35	50.54
Zm00001d046965_P001	Maize	nucleus	20.0	49.64
Zm00001d047626_P001	Maize	cytosol	7.83	49.54
Zm00001d031542_P001	Maize	nucleus	46.96	48.5
Zm00001d006696_P001	Maize	nucleus	16.23	47.26
GSMUA_Achr5P22680_001	Banana	extracellular	12.75	45.6
Os02t0149600-01	Rice	nucleus	43.19	44.74
Zm00001d018785_P001	Maize	cytosol	16.96	42.55
Zm00001d046814_P001	Maize	cytosol	11.3	41.94
TraesCS6B01G147000.1	Wheat	nucleus	44.49	41.04
TraesCS6D01G108900.1	Wheat	nucleus	42.46	38.86
KXG29470	Sorghum	nucleus, plastid	42.03	35.71

Protein Annotations

EnsemblPlants:CDX77068	EnsemblPlantsGene:GSBRNA2T00127644001	GO:A0A078CPT6	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
PFAM:PF04959	PFAM:PF12066	ProteinID:CDX77068	ProteinID:CDX77068.1	ScanProsite:PS00028	SEG:seg
UniParc:UPI0004EBED20	MapMan:15.5.15	MapMan:16.10.2.1.3	:	:	:

Description

BnaC04g38630D

Coordinates

chrLK031809:-:891107..894680

Molecular Weight (calculated)

77390.3 Da

IEP (calculated)

7.119

GRAVY (calculated)

-1.148

Length

690 amino acids

Sequence
(BLAST)

001: MADVTLPPPD SVDIRPPENT TTSLPPPQQD HEPQEQQQPP QRDSRERRDD RDLERPPNRC DRSPLPPPPR RDYKRRPSGS PPPPYRDRRH SPPMRRSPPP
101: PKRYRRDDNG YDGRRGGGYG PPDRRFGYEN DREMGGRHGY GDERPPGRFM GRYQDWEGGR GGYGDASNRG STQRDGLMSY KQFIQELEDD ILPSEAERRY
201: QEYKSEYITT QKRVYFNTHK EEEWLKDKYH PTNLLTVIEK RNEHARKVAK DFLLELQSGN LDLGPAVTAL NKTSEPKSED EAGGGGGGKR GKESDFSAAP
301: KAPSFTSDPK RILTDIEQAQ ALVRKLDSEK GIVDNVLSSS ETETSGKDKS HSGSTGPVII IRGLTSVKGL EGVELLDTLI TYLWRVHGVD YYGKVETSEA
401: KGLRHVRAEG KGPDAKGDEG EDKFDSHWQQ RLKGQDPLEV MAAKEKLDAA AIEALDPHVR KIRDEKYGWK YGCGAKGCTK LFHAAEFVHK HLKLKHAELI
501: VDMTVKVREE LYFQNYMNDP NAPGGQPATQ QPGPRDRPMM RRKPSMESRL RDDRGGRRER DRIDRSEDQQ RGDGNGPNGP NPEEGGYDAF GGQGGVHVPS
601: YSADMNAPPV LMPVPGAGPL GPFVPAPPEF AMQMFRDPSG PNPPLEGGGR GGPAPFLLSP AFRQDPRRLR SYQDLDAPEE EVTVIDYRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.