Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G021620.2 | Barley | nucleus | 89.0 | 83.18 |
| TraesCS6B01G147000.1 | Wheat | nucleus | 92.2 | 61.63 |
| TraesCS6D01G108900.1 | Wheat | nucleus | 92.8 | 61.54 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 4.8 | 48.98 |
| Os02t0149600-01 | Rice | nucleus | 64.8 | 48.65 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 54.6 | 46.59 |
| TraesCS7A01G423200.1 | Wheat | nucleus | 64.8 | 46.29 |
| TraesCS7A01G254300.1 | Wheat | nucleus | 52.8 | 41.06 |
| KRH56284 | Soybean | endoplasmic reticulum | 57.8 | 40.48 |
| KRH62750 | Soybean | nucleus | 57.2 | 40.23 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 56.6 | 38.5 |
| KRH44717 | Soybean | nucleus | 55.0 | 38.35 |
| KXG29470 | Sorghum | nucleus, plastid | 62.2 | 38.3 |
| Bra034322.1-P | Field mustard | nucleus | 52.8 | 38.15 |
| CDX71472 | Canola | nucleus | 53.2 | 37.84 |
| CDX77068 | Canola | nucleus | 52.0 | 37.68 |
| CDY04478 | Canola | nucleus | 53.2 | 37.46 |
| Solyc01g009090.2.1 | Tomato | nucleus | 56.0 | 37.43 |
| AT2G27100.1 | Thale cress | nucleus | 53.8 | 37.36 |
| Bra012034.1-P | Field mustard | nucleus | 53.0 | 37.32 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 14.4 | 37.31 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G119000.1 | EnsemblPlantsGene:TraesCS6A01G119000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:Arsenite-R_2 |
| InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 | PFAM:PF04959 |
| PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | MapMan:15.5.15 | MapMan:16.10.2.1.3 | : |
Description
No Description!
Coordinates
chr6A:+:89970508..89973861
Molecular Weight (calculated)
55751.8 Da
IEP (calculated)
7.768
GRAVY (calculated)
-0.540
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MILNIFRKGL MTYKQFILAL EDDVSPAEAE SRYQEYKTAY ITTQKHAYFD LHKDDTRLKE KYHPTSLLSV IERRNEFCKA AAKSLILDLR SGTLDLGPGM
101: IADGSSKSGN VNYGSSGNGE DYGNKRRKNG RGPPKEPGPL STAPKAHPVS SKYRRIQADI DQTLALVRKL DMEKGIVGNI LSIGGDHGKP DDDRSHVGSA
201: GPLVIIRSLT TVKGLDGVEL LDTLLTYLWR VHGVDYYGMS ERRNATGFRH VRADNKIADA FNISAADWEK KLDSFWHERL VNGEDPLVVL TAKDKIDTAT
301: VEALTPYVKK IVDENYGYKY GCGAMGCAKV FHAPEFVHKH LKLKHPDLVS VLTLGVQDDI YFQNYMNDPN APGGKPVMQQ SEQDSGRMRR IADEQALGAF
401: DEQGSNAPLI PDAPPTLLIP VPGAGLLGPF VPMPPDMAVQ MMREQRPPRP NGAQRRKKPL MPEPMMPMYP HFPLDPRPLR RYNDLDAPEE EVTAIDYRSV
101: IADGSSKSGN VNYGSSGNGE DYGNKRRKNG RGPPKEPGPL STAPKAHPVS SKYRRIQADI DQTLALVRKL DMEKGIVGNI LSIGGDHGKP DDDRSHVGSA
201: GPLVIIRSLT TVKGLDGVEL LDTLLTYLWR VHGVDYYGMS ERRNATGFRH VRADNKIADA FNISAADWEK KLDSFWHERL VNGEDPLVVL TAKDKIDTAT
301: VEALTPYVKK IVDENYGYKY GCGAMGCAKV FHAPEFVHKH LKLKHPDLVS VLTLGVQDDI YFQNYMNDPN APGGKPVMQQ SEQDSGRMRR IADEQALGAF
401: DEQGSNAPLI PDAPPTLLIP VPGAGLLGPF VPMPPDMAVQ MMREQRPPRP NGAQRRKKPL MPEPMMPMYP HFPLDPRPLR RYNDLDAPEE EVTAIDYRSV
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.