Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G119000.1 | Wheat | nucleus | 61.63 | 92.2 |
| HORVU6Hr1G021620.2 | Barley | nucleus | 62.43 | 87.29 |
| TraesCS6D01G108900.1 | Wheat | nucleus | 71.52 | 70.95 |
| Os02t0149600-01 | Rice | nucleus | 48.8 | 54.8 |
| TraesCS7B01G323700.2 | Wheat | nucleus | 49.47 | 52.86 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 3.21 | 48.98 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 37.43 | 47.78 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 45.45 | 46.26 |
| KRH56284 | Soybean | endoplasmic reticulum | 43.98 | 46.08 |
| KRH62750 | Soybean | nucleus | 43.58 | 45.85 |
| Bra034322.1-P | Field mustard | nucleus | 41.44 | 44.8 |
| TraesCS7B01G150500.1 | Wheat | nucleus | 38.5 | 44.79 |
| KRH44717 | Soybean | nucleus | 42.91 | 44.77 |
| Solyc01g009090.2.1 | Tomato | nucleus | 44.65 | 44.65 |
| CDX77068 | Canola | nucleus | 41.04 | 44.49 |
| AT2G27100.1 | Thale cress | nucleus | 42.11 | 43.75 |
| CDX71472 | Canola | nucleus | 40.91 | 43.53 |
| KXG29470 | Sorghum | nucleus, plastid | 47.06 | 43.35 |
| CDY04478 | Canola | nucleus | 41.04 | 43.24 |
| Bra012034.1-P | Field mustard | nucleus | 40.91 | 43.1 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 9.49 | 36.79 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G147000.1 | EnsemblPlantsGene:TraesCS6B01G147000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:Arsenite-R_2 |
| InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 | PFAM:PF04959 |
| PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | MapMan:15.5.15 | MapMan:16.10.2.1.3 | : |
Description
No Description!
Coordinates
chr6B:+:147882252..147887340
Molecular Weight (calculated)
82182.1 Da
IEP (calculated)
10.082
GRAVY (calculated)
-0.886
Length
748 amino acids
Sequence
(BLAST)
(BLAST)
001: MWPTWDVPRS PGDQPVRPLL AAPPGDRHAR PGPARSWADE ADDDDGPPLP PPPPLGSSRP VRLVDALASR SKDAAQAQAR ALPPPPPLGS SRPERVAGHR
101: MDDDSPRSDG RSSSPGGGQG ARRRSRSPRE RGKPSPERVH VPLPPPPLVG SSRPVRVTYR LESDSSRSSR SSSPAEIMGP PRRRSPSRSN DGKRRRRSPP
201: RRSPSPDPPK RPRRDDGAGR RSPPRGGRYE RGGDGGRLAG HRAPDGPNSG YGASSKVQNI TQRKGLMTYK QFILALEDDI SPAEAESRYQ EYKTAYITTQ
301: KHAYFDLHKD DTRLKEKYHP TSLLSVIERR NEFCKAAAKS LILDLRSGTL DLGPGMTADG SSKSGNDNCG SSGNGEDYGN KRRKNGRGPP KESGPLSTAP
401: KAHPVSSKYR RIQTDIDQTL ALVRKLDSEK GIVGNILSIG GDHGKPDDDR SHVGSAGPLV IIRGLTTVKG LDGVELLDTL LTYLWRVHGV DYYGMSERRN
501: ANGFRHVRAD NKSADAFNIS AADWEKKLDS FWHERLVNGE DPLVVLTAKD KIDAATVEAL APYVKKIMDE NYGYKYGCGA MGCTKVFHAP EFVHKHLKLK
601: HPDLVSVLTL SVQDDIYFQN YMNDPNAPGG KPVMQKSEQD SGRMRRIPDE QGSDAPLIPD APPTVLVPLP GAGPLGPFVP IPPDMAVQMM REQRPPRPNG
701: AQHKKKPLMP EPMMPMYPHF PLDPRPLRRY NDLDAPEEEV TAIDYRSV
101: MDDDSPRSDG RSSSPGGGQG ARRRSRSPRE RGKPSPERVH VPLPPPPLVG SSRPVRVTYR LESDSSRSSR SSSPAEIMGP PRRRSPSRSN DGKRRRRSPP
201: RRSPSPDPPK RPRRDDGAGR RSPPRGGRYE RGGDGGRLAG HRAPDGPNSG YGASSKVQNI TQRKGLMTYK QFILALEDDI SPAEAESRYQ EYKTAYITTQ
301: KHAYFDLHKD DTRLKEKYHP TSLLSVIERR NEFCKAAAKS LILDLRSGTL DLGPGMTADG SSKSGNDNCG SSGNGEDYGN KRRKNGRGPP KESGPLSTAP
401: KAHPVSSKYR RIQTDIDQTL ALVRKLDSEK GIVGNILSIG GDHGKPDDDR SHVGSAGPLV IIRGLTTVKG LDGVELLDTL LTYLWRVHGV DYYGMSERRN
501: ANGFRHVRAD NKSADAFNIS AADWEKKLDS FWHERLVNGE DPLVVLTAKD KIDAATVEAL APYVKKIMDE NYGYKYGCGA MGCTKVFHAP EFVHKHLKLK
601: HPDLVSVLTL SVQDDIYFQN YMNDPNAPGG KPVMQKSEQD SGRMRRIPDE QGSDAPLIPD APPTVLVPLP GAGPLGPFVP IPPDMAVQMM REQRPPRPNG
701: AQHKKKPLMP EPMMPMYPHF PLDPRPLRRY NDLDAPEEEV TAIDYRSV
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.