Factsheet for VIT_13s0047g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0220g00050.t01	Wine grape	cytosol	6.31	75.51
GSMUA_Achr6P01800_001	Banana	nucleus	63.65	68.95
GSMUA_Achr7P19610_001	Banana	nucleus	61.6	66.61
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	48.63	62.5
KRH56284	Soybean	endoplasmic reticulum	70.82	58.12
VIT_06s0009g01570.t01	Wine grape	nucleus	72.87	58.1
KRH62750	Soybean	nucleus	70.31	57.95
HORVU7Hr1G052570.1	Barley	nucleus	51.37	57.12
KRH44717	Soybean	nucleus	68.26	55.79
HORVU0Hr1G020790.1	Barley	nucleus	41.81	55.06
TraesCS6A01G119000.1	Wheat	nucleus	46.59	54.6
Zm00001d046965_P001	Maize	nucleus	25.43	53.6
GSMUA_Achr10P...	Banana	nucleus	66.55	53.13
HORVU6Hr1G021620.2	Barley	nucleus	47.27	51.78
EER90312	Sorghum	nucleus	61.77	50.77
Zm00001d006696_P001	Maize	nucleus	20.31	50.21
Os06t0698859-01	Rice	nucleus	61.95	50.21
EES15338	Sorghum	nucleus	54.95	50.16
Zm00001d036495_P001	Maize	nucleus	61.43	49.86
HORVU7Hr1G097860.2	Barley	plastid	58.53	49.49
Zm00001d049767_P001	Maize	extracellular, nucleus	52.56	49.04
TraesCS7A01G423200.1	Wheat	nucleus	58.53	49.0
TraesCS7B01G323700.2	Wheat	nucleus	58.53	49.0
TraesCS7D01G416100.1	Wheat	nucleus	58.36	48.86
Zm00001d014655_P001	Maize	nucleus, plastid	60.75	47.98
Zm00001d031542_P001	Maize	nucleus	54.61	47.9
Os08t0517300-01	Rice	plastid	52.73	47.76
TraesCS7A01G254300.1	Wheat	nucleus	52.39	47.74
TraesCS7B01G150500.1	Wheat	nucleus	52.39	47.74
TraesCS7D01G252800.1	Wheat	nucleus	52.22	47.59
Zm00001d046814_P001	Maize	cytosol	14.33	45.16
GSMUA_Achr5P22680_001	Banana	extracellular	14.33	43.52
Zm00001d047626_P001	Maize	cytosol	7.85	42.2
Os02t0149600-01	Rice	nucleus	46.08	40.54
Zm00001d018785_P001	Maize	cytosol	18.94	40.36
TraesCS6B01G147000.1	Wheat	nucleus	47.78	37.43
TraesCS6D01G108900.1	Wheat	nucleus	47.27	36.74
KXG29470	Sorghum	nucleus, plastid	46.59	33.62

Protein Annotations

EntrezGene:100266053	wikigene:100266053	MapMan:15.5.15	MapMan:16.10.2.1.3	EMBL:AM429671	InterPro:Arsenite-R_2
ProteinID:CAN71440	ProteinID:CAN71440.1	ProteinID:CCB52186	ProteinID:CCB52186.1	InterPro:DUF3546	UniProt:F6HIW1
EMBL:FN595767	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100266053
wikigene:LOC100266053	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
UniParc:UPI00021090CA	ArrayExpress:VIT_13s0047g00310	EnsemblPlantsGene:VIT_13s0047g00310	EnsemblPlants:VIT_13s0047g00310.t01	RefSeq:XP_002273262	RefSeq:XP_002273262.1
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:16053582..16066629

Molecular Weight (calculated)

66040.7 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.936

Length

586 amino acids

Sequence
(BLAST)

001: MLRCCRFGYD YIGGYERMGG RPGYPDEKSH GRFMNRSDWE SNRGGYADLL DTGSKQREGL MSYKQFIQEL EDDILPAEAE RRYQEYRSEY ISTQKRAFFD
101: AHKDEEWLKD KYHPTNLLAV IERRNENARR MAKDFLLDLQ SGTLDIGPGV NASSSNKSGQ TSDPNSDDET ETGDKRRRHG RGPIKESDLS TAAVAHPNSS
201: EPRRIQADIE QALALVRKLD SEKGVEDNIL CSAEQKKTDS DKSHSGSMGP IIIIRGLASV KGLEGIELLD TILTYLWRIH GLDYYGMVET SEAKGLRHVR
301: AEGKGHEENS KAGADWEKKL DSRWQDRLRG QDPLETMAAK EKIDAAAVEG LDPYVRKIRD ERYGWKYGCG AKGCTKLFHA AEFVHKHLKL KHPELVMDLT
401: TKVREDLYFQ NYMNDPDAPG GTPVMQQQLL KDRLQRRRPG LDNRLKDDRG NRREHDRIER INDGERFDRT DNSPPHDRQS KGGGLEGGNL DESMYDTYGG
501: KDLGVIPPFP SDMGPPPVLM PVPGAGPLGP FVPAPPEVAM RMLREQGGSS SYEGGRQMRT GPHIGGPAPI LGVSSAFRQD PRRLRR

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.