Factsheet for Zm00001d049767_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005065_P002
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Zm00001d005065_P002	AT1G09700.1	23141542
AT2G27100.1	Zm00001d017373_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d029743_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d051242_P002	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046965_P001	Maize	nucleus	37.26	84.17
Zm00001d031542_P001	Maize	nucleus	85.67	80.54
HORVU7Hr1G052570.1	Barley	nucleus	66.72	79.51
HORVU0Hr1G020790.1	Barley	nucleus	55.1	77.75
Zm00001d006696_P001	Maize	nucleus	28.98	76.79
Os08t0517300-01	Rice	plastid	76.43	74.19
TraesCS7B01G150500.1	Wheat	nucleus	75.32	73.56
TraesCS7A01G254300.1	Wheat	nucleus	74.84	73.09
TraesCS7D01G252800.1	Wheat	nucleus	74.68	72.94
VIT_00s0220g00050.t01	Wine grape	cytosol	4.94	63.27
Zm00001d046814_P001	Maize	cytosol	17.83	60.22
Zm00001d047626_P001	Maize	cytosol	9.71	55.96
VIT_13s0047g00310.t01	Wine grape	nucleus	49.04	52.56
Zm00001d036495_P001	Maize	nucleus	55.73	48.48
KRH56284	Soybean	endoplasmic reticulum	55.1	48.46
Bra034322.1-P	Field mustard	nucleus	53.34	48.41
Zm00001d014655_P001	Maize	nucleus, plastid	57.17	48.38
KRH44717	Soybean	nucleus	55.1	48.26
KRH62750	Soybean	nucleus	54.46	48.1
VIT_06s0009g01570.t01	Wine grape	nucleus	56.21	48.03
CDX77068	Canola	nucleus	52.71	47.97
AT2G27100.1	Thale cress	nucleus	54.3	47.36
Solyc01g009090.2.1	Tomato	nucleus	56.05	47.06
CDX71472	Canola	nucleus	52.55	46.94
Bra012034.1-P	Field mustard	nucleus	52.55	46.48
CDY04478	Canola	nucleus	52.39	46.34
Zm00001d018785_P001	Maize	cytosol	16.56	37.82

Protein Annotations

EnsemblPlants:Zm00001d049767_P001	EnsemblPlants:Zm00001d049767_T001	EnsemblPlantsGene:Zm00001d049767	EntrezGene:541879	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165
PANTHER:PTHR13165:SF2	PFAM:PF04959	PFAM:PF12066	ProteinID:AQK51362.1	ScanProsite:PS00028	SEG:seg
UniParc:UPI0004DEC135	UniProt:A0A1D6PY33	MapMan:15.5.15	MapMan:16.10.2.1.3	:	:

Description

Putative SERRATE-related C2H2 zinc-finger family protein

Coordinates

chr4:+:43883748..43891489

Molecular Weight (calculated)

68710.2 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.918

Length

628 amino acids

Sequence
(BLAST)

001: MTEVADASPP PPTAGGGDRK RGRASPVPPL PGQHKRRREE GGGGGFDRRR LGPVGGGGHE QDDRRYGNGL GGIGGRGGDS RYTNRAPDSG RGGWNEGSGN
101: SRREGLMSYK QFIQELEDDV SPVEAQSRYE EYKSEYITTQ KKAYFALHKD EDWLRNKYHP TNLENVIERR NELARTTADD FFLQLQSGSL DTGPGLTGSA
201: VSKSGNNSSK NLDAVEGDGK KGKLGKGSDD SYYAAPKAHP VSSEVRRIRI DIEQAQGLIC KLDSEKGIEN NILSSSNHEK PDMDKSHGSM GPIVIVQGSS
301: TVKGLEGTEL LDTLVTYLWR IHGVDYYGMS ETNEPKGLRH VKADARTYNG ASSSATEWEN KLDSFWQDRI QGQDPLEILK AKEKIDGAAT EVLDPYVRKI
401: RDEKYGWKYG CGAKGCTKLF HAAEFVQKHI KLKHTDLVVD LTSKAREDIY FENYMNDPKA PGGTPIMQQP APRGKGRQRP PIESRLRDER GNHRLDSDGS
501: GENPDDPVYD SFGDPTMHGA FPPDIPAPPV LMPVPGAGPL GPFIPAPPEV AMHMLRDQGA PPPFEPSGGP HPRKAGRGSG GGGPPMRGPS PVFSAPPPHH
601: MHDPRRIRSY QDLDAPEDEV TVMDYRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.