Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005065_P002 | |
| Zm00001d017373_P001 | |
| Zm00001d029743_P001 | |
| Zm00001d051242_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 16.51 | 36.73 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 47.71 | 26.94 |
| Zm00001d036495_P001 | Maize | nucleus | 79.82 | 12.05 |
| Zm00001d014655_P001 | Maize | nucleus, plastid | 79.82 | 11.73 |
| Zm00001d049767_P001 | Maize | extracellular, nucleus | 55.96 | 9.71 |
| KRH56284 | Soybean | endoplasmic reticulum | 57.8 | 8.82 |
| KRH62750 | Soybean | nucleus | 55.96 | 8.58 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 55.05 | 8.16 |
| Solyc01g009090.2.1 | Tomato | nucleus | 55.96 | 8.16 |
| KRH44717 | Soybean | nucleus | 53.21 | 8.09 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 42.2 | 7.85 |
| CDX77068 | Canola | nucleus | 49.54 | 7.83 |
| Bra034322.1-P | Field mustard | nucleus | 49.54 | 7.8 |
| Zm00001d031542_P001 | Maize | nucleus | 47.71 | 7.78 |
| CDX71472 | Canola | nucleus | 49.54 | 7.68 |
| CDY04478 | Canola | nucleus | 49.54 | 7.61 |
| Bra012034.1-P | Field mustard | nucleus | 49.54 | 7.61 |
| AT2G27100.1 | Thale cress | nucleus | 48.62 | 7.36 |
| Zm00001d018785_P001 | Maize | cytosol | 14.68 | 5.82 |
| Zm00001d006696_P001 | Maize | nucleus | 11.93 | 5.49 |
| Zm00001d046965_P001 | Maize | nucleus | 11.93 | 4.68 |
| Zm00001d046814_P001 | Maize | cytosol | 3.67 | 2.15 |
Protein Annotations
| EnsemblPlants:Zm00001d047626_P001 | EnsemblPlants:Zm00001d047626_T001 | EnsemblPlantsGene:Zm00001d047626 | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 | ProteinID:AQL07137.1 |
| SEG:seg | UniParc:UPI000842547C | UniProt:A0A1D6PBY4 | MapMan:15.5.15 | MapMan:16.10.2.1.3 | : |
Description
Serrate RNA effector molecule
Coordinates
chr9:-:137459683..137460670
Molecular Weight (calculated)
12065.0 Da
IEP (calculated)
6.679
GRAVY (calculated)
-0.090
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYFHPIMSL LNTIQPILMP LPGAGPLGPF VPVPPKIAMH MLREQGQPPP FEPNGAPHGG IGMVESMMGG SAPIIAMPPN FRHDHRLLRI YYDLNAPDEE
101: VNVLDYRSL
101: VNVLDYRSL
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.