Factsheet for Zm00001d005065_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005065_P002
Zm00001d006103_P001
Zm00001d006696_P001
Zm00001d013796_P005
Zm00001d013797_P006
Zm00001d014655_P001
Zm00001d017373_P001
Zm00001d018785_P001
Zm00001d029743_P001
Zm00001d031542_P001
Zm00001d036495_P001
Zm00001d046814_P001
Zm00001d046965_P001
Zm00001d047626_P001
Zm00001d049767_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	Zm00001d005065_P002	AT1G09700.1	15821876
AT1G09700.1	Zm00001d006696_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d014655_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d018785_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d031542_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d036495_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d046814_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d046965_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d047626_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d049767_P001	AT2G27100.1	23141542
AT1G09700.1	Zm00001d013796_P005	AT3G03300.1	15821876
AT1G09700.1	Zm00001d013797_P006	AT3G03300.1	15821876
AT1G09700.1	Zm00001d017373_P001	AT4G21670.1	23141542
AT1G09700.1	Zm00001d029743_P001	AT4G21670.1	23141542
AT1G09700.1	Zm00001d051242_P002	AT4G21670.1	23141542
AT1G09700.1	Zm00001d006103_P001	AT5G41070.1	15821876
AT1G09700.1	Zm00001d006103_P001	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82704	Sorghum	cytosol, nucleus	59.22	78.12
Os05t0307400-01	Rice	cytosol	50.0	49.66
Os11t0109900-01	Rice	cytosol	52.77	48.41
TraesCS4A01G180400.1	Wheat	cytosol	44.24	47.17
TraesCS4D01G132400.1	Wheat	cytosol	44.24	47.06
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	43.55	46.32
Bra019999.1-P	Field mustard	plastid	28.34	44.89
CDX93488	Canola	plastid	28.11	44.36
TraesCS5D01G143500.2	Wheat	nucleus	51.84	42.61
CDY20678	Canola	cytosol	26.96	42.24
TraesCS5B01G148100.2	Wheat	nucleus	51.38	42.08
Bra030793.1-P	Field mustard	cytosol	26.73	41.73
CDX94957	Canola	cytosol, nucleus, plastid	27.19	41.7
GSMUA_Achr11P...	Banana	nucleus	35.71	41.44
TraesCS5A01G149400.2	Wheat	mitochondrion	51.84	40.47
HORVU5Hr1G047100.5	Barley	nucleus	50.92	38.57
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	31.8	38.33
KRH62246	Soybean	nucleus	30.18	36.49
CDY31070	Canola	endoplasmic reticulum, golgi	26.96	36.45
KRH52961	Soybean	nucleus	30.41	36.36
VIT_18s0001g07670.t01	Wine grape	nucleus	32.49	35.25
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	30.65	32.76
AT1G09700.1	Thale cress	plastid	30.41	31.5
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	31.34	31.41
Zm00001d022648_P001	Maize	mitochondrion, nucleus	11.75	20.73
Zm00001d032326_P002	Maize	cytosol, plastid	16.36	19.61
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	14.75	18.08
Os12t0109900-02	Rice	cytosol	18.43	17.32
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	16.82	14.04
Zm00001d032679_P001	Maize	nucleus	16.59	13.98
Zm00001d024861_P007	Maize	nucleus	16.36	13.81
Zm00001d052326_P001	Maize	cytosol	8.29	9.97

Protein Annotations

EntrezGene:100284085	MapMan:16.10.2.1.2	Gene3D:3.30.160.20	UniProt:A0A1D6EJ18	InterPro:DRB	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006412
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009733
GO:GO:0009735	GO:GO:0009737	GO:GO:0009987	GO:GO:0010267	GO:GO:0010305	GO:GO:0010445
GO:GO:0010589	GO:GO:0019538	GO:GO:0031054	GO:GO:0035196	GO:GO:0035198	GO:GO:0035279
GO:GO:0040029	GO:GO:0042802	InterPro:IPR014720	ProteinID:ONM20090.1	ProteinID:ONM20091.1	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000189D768
EnsemblPlantsGene:Zm00001d005065	EnsemblPlants:Zm00001d005065_P002	EnsemblPlants:Zm00001d005065_T002	InterPro:dsRBD_dom	:	:

Description

BcpLH protein

Coordinates

chr2:+:156948668..156951694

Molecular Weight (calculated)

47483.8 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.677

Length

434 amino acids

Sequence
(BLAST)

001: MHGGGAASPD AAICISPEAG PIVGVAPAGI RVENCYVFKS RLQEYAQRVG IPTPEYHTLK EGPSHEPVFK STVFVNNTKY ESLPGFFSRK AAEQSAAEVA
101: LMEIAMSAPV TEIRNMPAVQ ETGLCKNLLQ EYAQKMNYAI PSYICTKQAS GVAPFVCSVE IGGILYIGAA ARTKKEAEIK AARTALLAIQ SQSEGGANGA
201: KKYIVVPGQR PDKETNKNPT ETPIPLRVKK RGSRKKWNKR KFRRMADRIV DAGKDAEGLG TLLHDDYEEA RRIGYELPTD TAMVQFNKEV VMTQPGEGDR
301: IVQLEPPRDP AEVQYNKEAR SVEQDPPRDP AEVQHNKEAR SVEQDPPRDP AEVQHNKEAR TVEQDPPSNT EVWKPDNKAT TTEQESVSAF IALRSNGDST
401: DVEAAPGDTL MMQGQESEAT MQEASHAGEQ AQPN

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.