Factsheet for Zm00001d024861_P007

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21311	Sorghum	nucleus	84.82	76.09
TraesCS1D01G099700.1	Wheat	nucleus	63.62	57.27
TraesCS1A01G091200.2	Wheat	nucleus	62.84	56.67
TraesCS1B01G119000.1	Wheat	nucleus	62.84	55.88
Os05t0150400-01	Rice	cytosol, nucleus	64.59	55.06
HORVU1Hr1G021530.1	Barley	nucleus	61.87	54.83
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	30.54	44.35
KRH68665	Soybean	nucleus	37.35	35.62
KRG96921	Soybean	nucleus	36.38	34.76
VIT_14s0030g01280.t01	Wine grape	nucleus	38.52	34.38
GSMUA_Achr5P00420_001	Banana	nucleus	37.35	33.45
Zm00001d032679_P001	Maize	nucleus	30.16	30.1
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	30.16	29.81
VIT_05s0020g01850.t01	Wine grape	nucleus	36.77	22.88
Zm00001d022648_P001	Maize	mitochondrion, nucleus	10.89	22.76
Zm00001d005065_P002	Maize	cytosol	13.81	16.36
Zm00001d032326_P002	Maize	cytosol, plastid	9.53	13.54
Zm00001d052326_P001	Maize	cytosol	9.14	13.02

Protein Annotations

EntrezGene:100280218	Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A1D6J2G6	ProteinID:AQK42225.1	ProteinID:AQK42229.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF104	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00084521E0
EnsemblPlantsGene:Zm00001d024861	EnsemblPlants:Zm00001d024861_P007	EnsemblPlants:Zm00001d024861_T007	InterPro:dsRBD_dom	SEG:seg	:

Description

Double-stranded RNA-binding protein 3

Coordinates

chr10:-:91044483..91048676

Molecular Weight (calculated)

56212.0 Da

IEP (calculated)

9.002

GRAVY (calculated)

-0.589

Length

514 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY SCIREGPDHA PRFKATVNFN GEMFESPVFC STLRQAEHAA AEVALNELSK RGPSSTLAAK VLDETGIYKN LLQETAHRAG
101: LKLPIYTTIR SGPGHTPVFA CTVELAGKAF TGNPGKTKKQ AQKNAAMAAW SELKKLPRVG EPSSSSCPPD QDDEVQEQVV VTRTLASLNQ ANSGKVPHQK
201: EKQQSNNRPS SRRCYPKPNT PFYRPFMQNQ AYPSVPPDQA MYHLWHRMQV TANASLSSGL LPCFPDASPA MLRHFSPYPV SYVPRSPLPV TVHNVHERRH
301: DHTETVELPD AVVFSQCTTL DSFRTSECGG PPLKVQEPTK NRKEGCIGSP EKELDTLAVS SSTAQASSQK LEANEGKQTV QAGLKQTHEQ QLMSSSSCVS
401: SSVVAQSSHY ASSIQHDESI HRRNPPHTSS PALPDVWSSR SQALPRFGSP SWVFQQRPWL AAPVTVRTAV PVCSARPNVV NSTTGIRPAA QSHDGERDLN
501: SAAAASSGFN KLQI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.