Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G091200.2 | Wheat | nucleus | 93.7 | 93.86 |
| TraesCS1B01G119000.1 | Wheat | nucleus | 93.34 | 92.21 |
| HORVU1Hr1G021530.1 | Barley | nucleus | 91.24 | 89.83 |
| KXG21311 | Sorghum | nucleus | 65.5 | 65.27 |
| Os05t0150400-01 | Rice | cytosol, nucleus | 68.83 | 65.17 |
| Zm00001d024861_P007 | Maize | nucleus | 57.27 | 63.62 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 27.32 | 38.61 |
| KRH68665 | Soybean | nucleus | 34.68 | 36.73 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 36.08 | 35.89 |
| KRG96921 | Soybean | nucleus | 33.27 | 35.32 |
| VIT_14s0030g01280.t01 | Wine grape | nucleus | 35.2 | 34.9 |
| TraesCS1D01G155300.1 | Wheat | nucleus | 27.67 | 29.7 |
| VIT_05s0020g01850.t01 | Wine grape | nucleus | 35.03 | 24.21 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 13.49 | 18.87 |
| TraesCS6D01G161700.2 | Wheat | nucleus | 8.93 | 16.89 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 14.36 | 15.53 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 15.24 | 14.36 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G099700.1 | EnsemblPlantsGene:TraesCS1D01G099700 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF104 | PFAM:PF00035 | PFscan:PS50137 | SMART:SM00358 | SUPFAM:SSF54768 | TIGR:cd00048 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:86925777..86928638
Molecular Weight (calculated)
62695.6 Da
IEP (calculated)
9.269
GRAVY (calculated)
-0.703
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVTFN GESFESPGFY PTLRQAEHAA AEVALNELSK RGPSSSLAAK VLDETGIYKN LLQETAHRAG
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGNPGKTKKQ AQKNAAMVAW SELKQLPLVG EAASSSSPSD HDEEQEQVTV TRTLENLNRK NEGKASHQKE
201: KQQSNNRPQS RRSYPKPYVS FYGSHLQNQM YPNVAPEQAM YHMWNQVQAT QQKPQFTMVP NMGNTRFQPP PTMRSMYPSP PRGQFVMPAS QDALALLPCF
301: PEAAPVLPRY FSPYPASYVP RSPLPVTVHT MHRERQGYTE TVELPDASVL SGYTALDSSS TPENVGPSQV QQWPENGKEV YTESSAASVE ENKAPQTLSS
401: STAHPPSQKV EPNKDNKESK KPVEQPAKLS LSCVGSSVVQ RPVQRQGHPS PVQHGEPTHR SNLPFSRATS PELWSLDMQA PARYGAATPM SSSGLLYQQW
501: PPWLAAPVTV RTSIPVCSAR PNAAVNSNPG AAARAGPAVQ ILSREDPEAH RNTRHVGDAS TASSELNKLH M
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGNPGKTKKQ AQKNAAMVAW SELKQLPLVG EAASSSSPSD HDEEQEQVTV TRTLENLNRK NEGKASHQKE
201: KQQSNNRPQS RRSYPKPYVS FYGSHLQNQM YPNVAPEQAM YHMWNQVQAT QQKPQFTMVP NMGNTRFQPP PTMRSMYPSP PRGQFVMPAS QDALALLPCF
301: PEAAPVLPRY FSPYPASYVP RSPLPVTVHT MHRERQGYTE TVELPDASVL SGYTALDSSS TPENVGPSQV QQWPENGKEV YTESSAASVE ENKAPQTLSS
401: STAHPPSQKV EPNKDNKESK KPVEQPAKLS LSCVGSSVVQ RPVQRQGHPS PVQHGEPTHR SNLPFSRATS PELWSLDMQA PARYGAATPM SSSGLLYQQW
501: PPWLAAPVTV RTSIPVCSAR PNAAVNSNPG AAARAGPAVQ ILSREDPEAH RNTRHVGDAS TASSELNKLH M
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
Arabidopsis Description
DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.