CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024861_P007	Maize	nucleus	76.09	84.82
TraesCS1D01G099700.1	Wheat	nucleus	65.27	65.5
TraesCS1A01G091200.2	Wheat	nucleus	64.57	64.91
TraesCS1B01G119000.1	Wheat	nucleus	64.57	64.01
HORVU1Hr1G021530.1	Barley	nucleus	64.57	63.79
Os05t0150400-01	Rice	cytosol, nucleus	66.14	62.85
KRH68665	Soybean	nucleus	35.78	38.03
KRG96921	Soybean	nucleus	34.73	36.99
VIT_14s0030g01280.t01	Wine grape	nucleus	36.82	36.63
GSMUA_Achr5P00420_001	Banana	nucleus	35.08	35.02
EES16051	Sorghum	cytosol	10.82	31.31
KXG38314	Sorghum	mitochondrion, nucleus	28.1	29.81
VIT_05s0020g01850.t01	Wine grape	nucleus	35.78	24.82
EER88251	Sorghum	cytosol, mitochondrion, nucleus	10.47	24.69
OQU82704	Sorghum	cytosol, nucleus	11.52	20.06
KXG33474	Sorghum	mitochondrion	15.71	17.86
KXG22802	Sorghum	mitochondrion	12.57	16.67
EES14943	Sorghum	nucleus	8.2	15.77
EES09107	Sorghum	cytosol	6.81	10.8

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EntrezGene:8069500	UniProt:C5Z045	ProteinID:EES19030.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	EnsemblPlants:KXG21311	ProteinID:KXG21311
ProteinID:KXG21311.1	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF104	SMART:SM00358
EnsemblPlantsGene:SORBI_3009G045200	SUPFAM:SSF54768	unigene:Sbi.11610	UniParc:UPI0001A88C76	RefSeq:XP_002440600.1	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:4305931..4310619

Molecular Weight (calculated)

62887.8 Da

IEP (calculated)

8.947

GRAVY (calculated)

-0.701

Length

573 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY SCIREGPDHA PRFKATVNFN GEMFESPAFC STLRQAEHAA AEVALNELSK RGPSSTLAAK VLDETGIYKN LLQETAHRAG
101: LKLPIYTTIR SGPGHTPVFT CTVELAGKTF TGNPGKTKKQ AQKNAAMAAW SDLKQLPRIG EPSSSSCPAD QDDEEQEQVI VTRTLASLNQ ANIGKVPHQK
201: EKQQTNNRPS SQRSYPKPNT SFYRPYMQNQ AYPSVPPDQA MYHLWDRMQA TQPTPRFPVV PTMGNTRFPP PAAMLPMYPP PRGQFSNPAN QDALGLLPCF
301: PEAAPAVPRY FSPYPVSYVP RSPLPVTVHK IHEKRQDHTE TVELPDAAVF SPCTTFDSFR TSECGGPPRK VQEPTKNGKE GCTGSSTSPA EEHNTLTVPS
401: STTQSSLHKL EPNEDEQTLQ AGLKQAHEQQ LMPSSSCVSP LVTAQNSVQR KHYASSIQHE PIHRRNPPHT NPPALPDLWS SHSQALPRFG SAPPVNSSSV
501: FQQRPPWLAA LVTVRTAVPV CSARPNVGTA PARPASQNRS APARAEPESR THNGERDLNS AAISSSEFNK LHI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.