Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G119000.1 | Wheat | nucleus | 96.32 | 94.98 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 93.86 | 93.7 |
| HORVU1Hr1G021530.1 | Barley | nucleus | 92.63 | 91.03 |
| Os05t0150400-01 | Rice | cytosol, nucleus | 68.77 | 65.01 |
| KXG21311 | Sorghum | nucleus | 64.91 | 64.57 |
| Zm00001d024861_P007 | Maize | nucleus | 56.67 | 62.84 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 27.19 | 42.7 |
| KRH68665 | Soybean | nucleus | 35.09 | 37.11 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 36.14 | 35.89 |
| KRG96921 | Soybean | nucleus | 33.68 | 35.69 |
| VIT_14s0030g01280.t01 | Wine grape | nucleus | 35.44 | 35.07 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 27.72 | 30.04 |
| VIT_05s0020g01850.t01 | Wine grape | nucleus | 35.44 | 24.46 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 13.68 | 19.16 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 5.79 | 18.75 |
| TraesCS6A01G172500.1 | Wheat | cytosol | 8.95 | 17.96 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 14.74 | 15.11 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 15.79 | 14.83 |
| TraesCS5A01G149300.1 | Wheat | cytosol, plastid | 8.07 | 13.37 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G091200.2 | EnsemblPlantsGene:TraesCS1A01G091200 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF104 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:82531179..82534245
Molecular Weight (calculated)
62492.3 Da
IEP (calculated)
9.457
GRAVY (calculated)
-0.718
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVTFN GESFESPGFY PTLRQAEHAA AEVALNELSK RGPSSSLAAK VLDETGIYKN LLQETAHRAG
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGNPGKTKKQ AQKNAAMVAW SELKQLPLVG EAASSSSPSD HDEEQEQVTV TRTLENLNRK NEGKASHQKE
201: KQQSNNRPQS RRSYPKPYVS FYGSHLQNQM YPNVAPEQAM YHMWNQVQAT QQKPHLPMVQ AMGNTRFQPP PTMLSVYPPP PRRQFAVPAS QDALALLPCF
301: PETAPVLPRY FSPYPATYVP RSPLPVTVHT MNRERQGYTE TVGLPDAAVL SGYTALDSSS TPENVGPSQV EQWPESGKEA YTESSAASVE ENKATQTSSS
401: TAHPLSQKLE PNQDDKESKK PAEQPPKPSL SRAGSSVVQR PVQRQGYPSP VQHGEPTHRS NLPFSRATSP ELWSMDMQAP ARYGAAAPMS SSGLLYQQRP
501: PWLAAPVTVR TSIPVCSARP NAAVNSSPGA AARARPAVQI LSREDPEAHR NTRHVGDAST ASSELNKLHM
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGNPGKTKKQ AQKNAAMVAW SELKQLPLVG EAASSSSPSD HDEEQEQVTV TRTLENLNRK NEGKASHQKE
201: KQQSNNRPQS RRSYPKPYVS FYGSHLQNQM YPNVAPEQAM YHMWNQVQAT QQKPHLPMVQ AMGNTRFQPP PTMLSVYPPP PRRQFAVPAS QDALALLPCF
301: PETAPVLPRY FSPYPATYVP RSPLPVTVHT MNRERQGYTE TVGLPDAAVL SGYTALDSSS TPENVGPSQV EQWPESGKEA YTESSAASVE ENKATQTSSS
401: TAHPLSQKLE PNQDDKESKK PAEQPPKPSL SRAGSSVVQR PVQRQGYPSP VQHGEPTHRS NLPFSRATSP ELWSMDMQAP ARYGAAAPMS SSGLLYQQRP
501: PWLAAPVTVR TSIPVCSARP NAAVNSSPGA AARARPAVQI LSREDPEAHR NTRHVGDAST ASSELNKLHM
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
Arabidopsis Description
DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.