Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G161700.2 | Wheat | nucleus | 97.54 | 91.72 |
| TraesCS6B01G200200.1 | Wheat | nucleus | 95.77 | 89.77 |
| EES14943 | Sorghum | nucleus | 46.83 | 44.63 |
| Os08t0384100-01 | Rice | cytosol | 48.59 | 44.23 |
| Zm00001d032326_P002 | Maize | cytosol, plastid | 46.83 | 36.74 |
| KRH63090 | Soybean | nucleus | 20.07 | 36.54 |
| KRH62980 | Soybean | nucleus | 22.18 | 31.66 |
| Solyc03g118950.1.1 | Tomato | cytosol, nucleus, plastid | 21.13 | 30.3 |
| PGSC0003DMT400014406 | Potato | nucleus | 20.42 | 26.85 |
| PGSC0003DMT400088113 | Potato | nucleus | 16.2 | 26.74 |
| VIT_14s0006g01440.t01 | Wine grape | nucleus | 29.58 | 25.23 |
| GSMUA_Achr2P22850_001 | Banana | cytosol | 26.41 | 24.27 |
| KRH01275 | Soybean | nucleus | 25.0 | 21.26 |
| PGSC0003DMT400085647 | Potato | cytosol, nucleus | 19.01 | 20.38 |
| KRH30959 | Soybean | mitochondrion | 19.72 | 20.29 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 10.56 | 17.05 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 23.24 | 16.22 |
| KRH15123 | Soybean | nucleus | 25.7 | 15.9 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 19.01 | 14.88 |
| KRH73012 | Soybean | nucleus | 15.14 | 14.73 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 21.13 | 10.79 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 19.72 | 10.65 |
| TraesCS1A01G091200.2 | Wheat | nucleus | 17.96 | 8.95 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 16.9 | 7.91 |
| TraesCS5A01G149300.1 | Wheat | cytosol, plastid | 9.15 | 7.56 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G172500.1 | EnsemblPlantsGene:TraesCS6A01G172500 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF8 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:183369568..183379274
Molecular Weight (calculated)
30655.0 Da
IEP (calculated)
8.378
GRAVY (calculated)
-0.527
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTAAAAAP VPGAIPAAAP AAPSAQPHPV PDKCTNYKNH LQEWTQRNDQ KLPAYNTESK RDHHRLEFRS TVEVGGERFQ SARNHSRRKD AEQDAARVAY
101: EILVTKTVND DDHTDALGLI DQGVVFCKSI LHEFAVKTKV DQPTYSADHP EGVSPMTLFV SSVLFAGNTY TGEAATCKKD AEQKAARVAV KSILATKNTC
201: MHQIVRSKKE LIIAITSSGF NKERGVVSQE NCNAPTNAIT PIKFVPAGEA AGLTADQGAT NVPEDDPCAQ AVSGSEKRKK HRKV
101: EILVTKTVND DDHTDALGLI DQGVVFCKSI LHEFAVKTKV DQPTYSADHP EGVSPMTLFV SSVLFAGNTY TGEAATCKKD AEQKAARVAV KSILATKNTC
201: MHQIVRSKKE LIIAITSSGF NKERGVVSQE NCNAPTNAIT PIKFVPAGEA AGLTADQGAT NVPEDDPCAQ AVSGSEKRKK HRKV
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.