CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63090	Soybean	nucleus	28.32	83.33
KRH73012	Soybean	nucleus	49.02	77.05
KRH62980	Soybean	nucleus	32.46	74.87
VIT_14s0006g01440.t01	Wine grape	nucleus	31.37	43.24
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	15.47	35.86
KRH30959	Soybean	mitochondrion	20.7	34.42
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	11.55	34.19
KRH01275	Soybean	nucleus	24.18	33.23
PGSC0003DMT400088113	Potato	nucleus	12.42	33.14
PGSC0003DMT400014406	Potato	nucleus	14.81	31.48
KRH58007	Soybean	nucleus	6.1	31.11
KRG90046	Soybean	nucleus	6.1	31.11
GSMUA_Achr2P22850_001	Banana	cytosol	20.7	30.74
PGSC0003DMT400085647	Potato	cytosol, nucleus	15.9	27.55
EES14943	Sorghum	nucleus	16.78	25.84
TraesCS6A01G172500.1	Wheat	cytosol	15.9	25.7
TraesCS6D01G161700.2	Wheat	nucleus	16.34	24.83
TraesCS6B01G200200.1	Wheat	nucleus	15.9	24.09
Os08t0384100-01	Rice	cytosol	16.34	24.04
Zm00001d032326_P002	Maize	cytosol, plastid	15.47	19.61
KRH62246	Soybean	nucleus	15.03	19.22
KRH52961	Soybean	nucleus	15.03	19.01
KRH25014	Soybean	cytosol, nucleus, plastid	15.25	17.46
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	14.38	16.79
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	15.03	16.79
KRH29911	Soybean	cytosol, nucleus, plastid	14.81	16.55
KRG96921	Soybean	nucleus	17.86	15.24
KRH68665	Soybean	nucleus	17.43	14.84
KRG98822	Soybean	nucleus	7.84	13.28
KRH46125	Soybean	mitochondrion, nucleus	10.02	13.07
KRH57881	Soybean	nucleus	13.94	12.7
EES09107	Sorghum	cytosol	7.19	9.14
Zm00001d052326_P001	Maize	cytosol	7.19	9.14
TraesCS5A01G149300.1	Wheat	cytosol, plastid	6.75	9.01
TraesCS5B01G148000.1	Wheat	plastid	6.54	8.72

Protein Annotations

EntrezGene:100798730	Gene3D:3.30.160.20	MapMan:35.2	EMBL:ACUP02008563	EnsemblPlantsGene:GLYMA_14G069800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054	GO:GO:0040029	GO:GO:0090502
UniProt:I1M869	InterPro:IPR014720	EnsemblPlants:KRH15123	ProteinID:KRH15123	ProteinID:KRH15123.1	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00023D4A91
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:5854940..5859777

Molecular Weight (calculated)

49597.4 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.407

Length

459 amino acids

Sequence
(BLAST)

001: MALSSSEPPP PSVPAPVQSN PPPHLMYKNR LQEFTSKSGI NFPVYQTINE GQDHSPKFRS TVWVADMGYT SQSTFSHKKA AEHEAARLAL ESILKRTRDE
101: GLSLVNQISP FSKSIMNEYA DKLHVEQPTY NTDQQQLGGV LPIFITSLVF NGTSYTGDPA RTKKEAEQSA AKAAILSIMG DSSSGTVLVE IIKSKSIFYD
201: AIKGKGRSLS QPSAVLSTTN AGQISITLDH KDTEVAACVA DNNNNETKVE FPEFPKMLST CQELQMIHQE SSLEANNVSL QPGSEHSIDN DSTSKKRKKN
301: KKKSNKKLRS QTPLSPITGV PLNQVPPRTG VLMNQVTPCS TFLMNQVPPC TAVPMNQVPP CTAVPMSQLY ARTSPMDQVP PRTAPMNQVM PCTAAPMDQG
401: PPRTAAPMNQ VPPCSAFPMI QVAPCTSATA APMNQVPPAA PMNQVPPCTA ASMNKVPLL

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.