Factsheet for VIT_14s0006g01440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63090	Soybean	nucleus	24.92	53.21
KRH62980	Soybean	nucleus	27.33	45.73
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	24.62	41.41
GSMUA_Achr2P22850_001	Banana	cytosol	37.54	40.45
PGSC0003DMT400088113	Potato	nucleus	20.12	38.95
KRH30959	Soybean	mitochondrion	31.83	38.41
PGSC0003DMT400014406	Potato	nucleus	24.32	37.5
KRH01275	Soybean	nucleus	34.23	34.13
KRH73012	Soybean	nucleus	29.43	33.56
PGSC0003DMT400085647	Potato	cytosol, nucleus	26.43	33.21
KRH15123	Soybean	nucleus	43.24	31.37
EES14943	Sorghum	nucleus	27.63	30.87
TraesCS6A01G172500.1	Wheat	cytosol	25.23	29.58
VIT_08s0056g01550.t01	Wine grape	plastid	14.71	29.52
TraesCS6D01G161700.2	Wheat	nucleus	25.53	28.15
TraesCS6B01G200200.1	Wheat	nucleus	25.53	28.05
Os08t0384100-01	Rice	cytosol	25.53	27.24
Zm00001d032326_P002	Maize	cytosol, plastid	25.83	23.76
VIT_18s0001g07670.t01	Wine grape	nucleus	21.92	18.25
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	20.42	16.46
VIT_14s0068g01520.t01	Wine grape	nucleus	18.62	12.89
VIT_14s0030g01280.t01	Wine grape	nucleus	21.02	12.15
TraesCS5A01G149300.1	Wheat	cytosol, plastid	12.01	11.63
TraesCS5B01G148000.1	Wheat	plastid	11.71	11.34
Zm00001d052326_P001	Maize	cytosol	10.51	9.7
EES09107	Sorghum	cytosol	10.21	9.42
VIT_05s0020g01850.t01	Wine grape	nucleus	20.12	8.11

Protein Annotations

EntrezGene:100257098	wikigene:100257098	Gene3D:3.30.160.20	MapMan:35.1	ProteinID:CBI33535	ProteinID:CBI33535.3
UniProt:D7TSR3	EMBL:FN596245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030422	GO:GO:0031053
GO:GO:0031054	GO:GO:0040029	GO:GO:0090502	InterPro:IPR014720	EntrezGene:LOC100257098	wikigene:LOC100257098
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	SMART:SM00358	SUPFAM:SSF54768
TIGR:TC57374	UniParc:UPI0001BE3B11	ArrayExpress:VIT_14s0006g01440	EnsemblPlantsGene:VIT_14s0006g01440	EnsemblPlants:VIT_14s0006g01440.t01	RefSeq:XP_002272597
RefSeq:XP_002272597.2	RefSeq:XP_010660330.1	InterPro:dsRBD_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:17427404..17455287

Molecular Weight (calculated)

36229.9 Da

IEP (calculated)

9.944

GRAVY (calculated)

-0.221

Length

333 amino acids

Sequence
(BLAST)

001: MSEAAKVDCP APSSTRLPEH LMHKNRLQEY TQRSAIPLPI YQTVNEGFQH APKFRSTVLV DGATYTSPNT FSHRKAAEQD VARLALEFIS KKIKDEGCPL
101: IREDTVFCKS ILNEFAVKMN LEKPTYTTVQ PEGLLPVFVS SLVFNGVTYT GDAGRNKKEA EQLAARTVIL SILGNSGSGT LLSEIIKSKV KLYAALHRVK
201: DPSYIHTGIL PIGLTSGIPP CKGKEVEVAP GTDQLLPTAV SVPLSGQLVH VPVTHPPVHE LEKPKPNVSS EVIAPPISFV PSVFEQPLVV SPTTGRKRNR
301: KNKKKANKKL RTDAQLPVAV LPLNQASPCS VAQ

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.