Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400085647 | Potato | cytosol, nucleus | 68.02 | 44.15 |
| PGSC0003DMT400014406 | Potato | nucleus | 47.09 | 37.5 |
| KRH62980 | Soybean | nucleus | 30.23 | 26.13 |
| KRH63090 | Soybean | nucleus | 22.09 | 24.36 |
| VIT_14s0006g01440.t01 | Wine grape | nucleus | 38.95 | 20.12 |
| KRH30959 | Soybean | mitochondrion | 31.98 | 19.93 |
| GSMUA_Achr2P22850_001 | Banana | cytosol | 31.98 | 17.8 |
| EES14943 | Sorghum | nucleus | 28.49 | 16.44 |
| TraesCS6A01G172500.1 | Wheat | cytosol | 26.74 | 16.2 |
| KRH01275 | Soybean | nucleus | 31.4 | 16.17 |
| TraesCS6D01G161700.2 | Wheat | nucleus | 26.74 | 15.23 |
| TraesCS6B01G200200.1 | Wheat | nucleus | 26.74 | 15.18 |
| Os08t0384100-01 | Rice | cytosol | 25.58 | 14.1 |
| KRH73012 | Soybean | nucleus | 22.67 | 13.36 |
| Zm00001d032326_P002 | Maize | cytosol, plastid | 26.16 | 12.43 |
| KRH15123 | Soybean | nucleus | 33.14 | 12.42 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 24.42 | 10.34 |
| PGSC0003DMT400022469 | Potato | nucleus | 19.19 | 10.19 |
| PGSC0003DMT400020800 | Potato | nucleus | 20.93 | 8.8 |
| PGSC0003DMT400060309 | Potato | cytosol, nucleus, plastid | 22.67 | 7.71 |
| TraesCS5B01G148000.1 | Wheat | plastid | 8.14 | 4.07 |
| TraesCS5A01G149300.1 | Wheat | cytosol, plastid | 8.14 | 4.07 |
| Zm00001d052326_P001 | Maize | cytosol | 8.14 | 3.88 |
| EES09107 | Sorghum | cytosol | 7.56 | 3.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400088113 | EnsemblPlantsGene:PGSC0003DMG400037684 | EntrezGene:107058336 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 | PANTHER:PTHR11207:SF8 |
| PFAM:PF00035 | PFscan:PS50137 | PGSC:PGSC0003DMG400037684 | RefSeq:XP_015159398.1 | SEG:seg | SMART:SM00358 |
| SUPFAM:SSF54768 | UniParc:UPI000296B221 | UniProt:M1DF97 | MapMan:35.2 | : | : |
Description
Double-stranded RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037684]
Coordinates
chr3:-:44938569..44939403
Molecular Weight (calculated)
19267.0 Da
IEP (calculated)
10.003
GRAVY (calculated)
-0.743
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRAKVLVDG VEYTSKLTHS TKKQAEQEVA KIAYESIIHQ ETEVETFSFL YEDPTLCKSI PNEFALKKKM KPTYNMRSQS RGQNLVFICH LAFGGKTYKG
101: EEAGNKKLAE HLAARTAIKS LLDILSPIIK SKVIDDHSPK CSGNLEGESS SGQKHNANTN NNGRNKKRRF GN
101: EEAGNKKLAE HLAARTAIKS LLDILSPIIK SKVIDDHSPK CSGNLEGESS SGQKHNANTN NNGRNKKRRF GN
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.