Factsheet for PGSC0003DMT400060309

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	98.22	89.87
PGSC0003DMT400020800	Potato	nucleus	48.02	59.41
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	46.64	52.33
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	44.66	51.02
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	45.85	49.36
Os10t0480500-01	Rice	cytosol, nucleus, plastid	43.87	43.19
Zm00001d032679_P001	Maize	nucleus	43.87	43.11
TraesCS1B01G174000.1	Wheat	nucleus	43.08	41.37
HORVU1Hr1G041820.1	Barley	nucleus	43.08	41.37
TraesCS1A01G157700.3	Wheat	nucleus	42.69	41.06
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	42.09	40.96
TraesCS1D01G155300.1	Wheat	nucleus	42.89	40.79
KXG38314	Sorghum	mitochondrion, nucleus	42.69	40.0
PGSC0003DMT400088113	Potato	nucleus	7.71	22.67
PGSC0003DMT400014406	Potato	nucleus	9.49	22.22
PGSC0003DMT400085647	Potato	cytosol, nucleus	10.67	20.38
PGSC0003DMT400022469	Potato	nucleus	12.85	20.06
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	13.04	16.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400060309	EnsemblPlantsGene:PGSC0003DMG400023459	EntrezGene:102585580	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
PFAM:PF00035	PFscan:PS50137	PGSC:PGSC0003DMG400023459	RefSeq:XP_006345796.1	SEG:seg	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI000296052B	UniProt:M1C5K8	MapMan:35.1	:	:

Description

DsRNA-binding protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400023459]

Coordinates

chr5:+:51605412..51612140

Molecular Weight (calculated)

55103.1 Da

IEP (calculated)

9.694

GRAVY (calculated)

-0.398

Length

506 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEVFESPNYC STLRQAEHSA AEVALNSLSN RGPSNSLAAR ILDETGVYKN LLQEVSQRVG
101: ASLPAYTTFR SGLGHLPVFT CTVELAGVTF TGESAKNKKQ AEKNAAMAAW SSLKLLAQQS ESAKPDRRRN DEQEHVTVAR ALQRYILKAR AARVSFPIKF
201: PTPNPRPSSV QQLSSTTSKL LPLICPRTAP RSRPVSPLCL KPASQSRPID NTGSDASLSP RTAQTINNIL KDSFAMDSHR VRPEKFPAAG AAPYIPVRHF
301: GPHHRMAPPV TIRNAIPVFS APPLPQSSQP PRVMRPPGLG LAPPVCIRQA VPVYAAPPVR AEELPTLDRV MRHSGLGVAP VYAVPSVPKA PPLLVDEPLA
401: SKAPEIQVLD LPTCKAVLGK AESLHDHSEE KSCSEVQPTK REEPLDFEVS RSATMPVEGT KVAAKEKPLD FEVSRGATMP VEGTKVAAEE KPHDSLEIEN
501: LKQLKI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.