Factsheet for TraesCS5B01G148000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G149300.1	Wheat	cytosol, plastid	96.22	96.22
Zm00001d052326_P001	Maize	cytosol	66.86	63.71
EES09107	Sorghum	cytosol	66.86	63.71
VIT_14s0006g01440.t01	Wine grape	nucleus	11.34	11.71
KRH63090	Soybean	nucleus	5.23	11.54
KRH62980	Soybean	nucleus	6.4	11.06
TraesCS5B01G289100.1	Wheat	nucleus	11.34	10.66
KRH30959	Soybean	mitochondrion	8.14	10.14
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	5.81	10.1
GSMUA_Achr2P22850_001	Banana	cytosol	8.14	9.06
TraesCS6B01G200200.1	Wheat	nucleus	7.85	8.91
PGSC0003DMT400014406	Potato	nucleus	5.52	8.8
PGSC0003DMT400088113	Potato	nucleus	4.07	8.14
TraesCS1B01G119000.1	Wheat	nucleus	13.08	7.79
KRH01275	Soybean	nucleus	7.56	7.78
TraesCS1B01G174000.1	Wheat	nucleus	11.92	7.78
KRH15123	Soybean	nucleus	8.72	6.54
PGSC0003DMT400085647	Potato	cytosol, nucleus	4.36	5.66
KRH73012	Soybean	nucleus	4.65	5.48
TraesCS5B01G148100.2	Wheat	nucleus	8.43	5.47
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	8.43	5.32
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	8.72	4.95
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	8.14	4.62

Protein Annotations

EnsemblPlants:TraesCS5B01G148000.1	EnsemblPlantsGene:TraesCS5B01G148000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF927
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr5B:+:276251557..276252591

Molecular Weight (calculated)

36043.7 Da

IEP (calculated)

6.761

GRAVY (calculated)

0.263

Length

344 amino acids

Sequence
(BLAST)

001: MSCSPRPGPD HHLLLATLAR HGRLAAAATL LSTAVRTTRA LNTILAALCS SPSLLRAAPS VLLLAAPTAS PDAATFRVLT SALCRASRPS AAAGLVRCMP
101: SLHLDPDSPL CRAVLSSLCR YAPARDAAAF LDDMRRWGVP PSGLDHRAVL RALLREGMVA EAYEVVKEKM GSDGVAPGVA DFELLLRAFS ERGQFDAVDE
201: AFDEMLLRGL VPGVAVYNVY VAALCKKGDL AGARRMVECM ERAGCPPDVR TFSVVVAGCV SAGDAGAARD VAWEAVQRGL RWDTPSMVEL VGLLRAGGHV
301: ADAHGLLLDV FLHGGCTGVD ASTLGQLICA GEDACSVITD HPKD

Best Arabidopsis Sequence Match ( AT2G38420.1 )
(BLAST)

001: MARSSSWHRM SNFMRKYRKI PHSSFKTKWN ENLKQKYAME ELRSNLLTDS ENASVMRTLL SSFQLHNCEP TPQAYRFVIK TLAKSSQLEN ISSVLYHLEV
101: SEKFDTPESI FRDVIAAYGF SGRIEEAIEV FFKIPNFRCV PSAYTLNALL LVLVRKRQSL ELVPEILVKA CRMGVRLEES TFGILIDALC RIGEVDCATE
201: LVRYMSQDSV IVDPRLYSRL LSSVCKHKDS SCFDVIGYLE DLRKTRFSPG LRDYTVVMRF LVEGGRGKEV VSVLNQMKCD RVEPDLVCYT IVLQGVIADE
301: DYPKADKLFD ELLLLGLAPD VYTYNVYING LCKQNDIEGA LKMMSSMNKL GSEPNVVTYN ILIKALVKAG DLSRAKTLWK EMETNGVNRN SHTFDIMISA
401: YIEVDEVVCA HGLLEEAFNM NVFVKSSRIE EVISRLCEKG LMDQAVELLA HLV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.