CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	KRG89812	AT2G41090.1	17360592
AT2G28380.1	KRG94975	AT2G41090.1	17360592
AT2G28380.1	KRH18664	AT2G41090.1	17360592
AT2G28380.1	KRG89812	AT2G41100.1	17360592
AT2G28380.1	KRG94975	AT2G41100.1	17360592
AT2G28380.1	KRH18664	AT2G41100.1	17360592
AT2G28380.1	KRH31638	AT4G14640.1	17360592
AT2G28380.1	KRH69070	AT4G14640.1	17360592
AT2G28380.1	KRG89812	AT5G21274.1	17360592
AT2G28380.1	KRG94975	AT5G21274.1	17360592
AT2G28380.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	35.62	90.32
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	92.88	88.81
KRG90046	Soybean	nucleus	19.08	83.33
KRH58007	Soybean	nucleus	18.58	81.11
KRH25014	Soybean	cytosol, nucleus, plastid	73.28	71.82
KRH29911	Soybean	cytosol, nucleus, plastid	74.05	70.8
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	68.19	64.89
PGSC0003DMT400020800	Potato	nucleus	62.85	60.39
Solyc11g069460.1.1	Tomato	nucleus	62.85	59.66
AT2G28380.1	Thale cress	cytosol	63.1	57.14
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	60.81	55.58
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	61.07	55.43
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	60.56	55.35
Bra035704.1-P	Field mustard	nucleus	60.81	55.2
CDY30490	Canola	nucleus	60.56	54.84
CDY15737	Canola	cytosol	59.54	54.04
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	61.07	53.22
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	59.03	52.37
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	62.34	52.13
Os10t0480500-01	Rice	cytosol, nucleus, plastid	55.22	42.22
Zm00001d032679_P001	Maize	nucleus	54.71	41.75
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	54.45	41.15
HORVU1Hr1G041820.1	Barley	nucleus	54.2	40.42
KXG38314	Sorghum	mitochondrion, nucleus	54.71	39.81
TraesCS1A01G157700.3	Wheat	nucleus	53.18	39.73
TraesCS1B01G174000.1	Wheat	nucleus	53.18	39.66
TraesCS1D01G155300.1	Wheat	nucleus	53.18	39.29
KRH68665	Soybean	nucleus	43.0	31.35
KRG96921	Soybean	nucleus	41.98	30.67
KRH63090	Soybean	nucleus	10.94	27.56
KRH62980	Soybean	nucleus	11.7	23.12
KRH46125	Soybean	mitochondrion, nucleus	17.05	19.03
KRG98822	Soybean	nucleus	12.47	18.08
KRH52961	Soybean	nucleus	15.52	16.8
KRH62246	Soybean	nucleus	15.27	16.71
KRH57881	Soybean	nucleus	21.12	16.47
KRH01275	Soybean	nucleus	12.72	14.97
KRH30959	Soybean	mitochondrion	10.43	14.86
KRH15123	Soybean	nucleus	16.79	14.38
KRH73012	Soybean	nucleus	10.18	13.7

Protein Annotations

EMBL:ACUP02008440	EnsemblPlants:KRH22885	EnsemblPlantsGene:GLYMA_13G325600	EntrezGene:100814005	Gene3D:3.30.160.20	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910
PANTHER:PTHR10910:SF141	PFAM:PF00035	PFscan:PS50137	ProteinID:KRH22885	ProteinID:KRH22885.1	SEG:seg
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0001CAAC13	UniProt:K7M366	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr13:-:42075768..42078704

Molecular Weight (calculated)

42802.1 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.461

Length

393 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFETPHYC STLRQAEHSA AEAALNSLSH RGPSHSLAAK ILDETGVYKN LLQEIAQRVG
101: APLPHYTTYR SGLGHLPVFT GIVELAGITF TGEPAKNKKQ AEKNAAMAAW SALKQLAKET ASSSTEPENN DEVEQITIAR ALLNYRLKEK MTMSNPNAPL
201: PFHERFQIQN PRPISSQPPP ATSSKILPLI CQKTAPRSKP SLATTTTNES PGSRHPQAAV AVTSDNSNLP QQSCSLECRA TRPLKFPAAG AAPYVPIRQM
301: RPSCQRIAPP VTIRTVVPAF AAPPASVPHP VIRAPPVRVA PPVTIRQAVP LYAAPKQQKD LPTANASGQQ DKLPVKIQEM DKVENITPES NYA

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.