Factsheet for Bra030793.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012034.1-P
Bra013546.1-P
Bra019999.1-P
Bra020905.1-P
Bra025523.1-P
Bra030793.1-P
Bra031999.1-P
Bra034322.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	Bra019999.1-P	AT1G09700.1	15821876
AT1G09700.1	Bra030793.1-P	AT1G09700.1	15821876
AT1G09700.1	Bra012034.1-P	AT2G27100.1	23141542
AT1G09700.1	Bra034322.1-P	AT2G27100.1	23141542
AT1G09700.1	Bra031999.1-P	AT3G03300.1	15821876
AT1G09700.1	Bra013546.1-P	AT4G21670.1	23141542
AT1G09700.1	Bra020905.1-P	AT4G21670.1	23141542
AT1G09700.1	Bra038764.1-P	AT4G21670.1	23141542
AT1G09700.1	Bra025523.1-P	AT5G41070.1	15821876
AT1G09700.1	Bra025523.1-P	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20678	Canola	cytosol	95.68	96.03
Bra019999.1-P	Field mustard	plastid	84.89	86.13
CDY31070	Canola	endoplasmic reticulum, golgi	94.24	81.62
AT1G09700.1	Thale cress	plastid	77.7	51.55
KRH62246	Soybean	nucleus	55.04	42.62
KRH52961	Soybean	nucleus	55.04	42.15
VIT_18s0001g07670.t01	Wine grape	nucleus	52.88	36.75
OQU82704	Sorghum	cytosol, nucleus	41.37	34.95
GSMUA_Achr11P...	Banana	nucleus	46.04	34.22
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	46.04	31.53
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	38.49	29.72
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	46.04	29.56
Os05t0307400-01	Rice	cytosol	45.68	29.06
KXG22802	Sorghum	mitochondrion	44.24	28.47
Os11t0109900-01	Rice	cytosol	46.4	27.27
TraesCS4A01G180400.1	Wheat	cytosol	39.21	26.78
Zm00001d005065_P002	Maize	cytosol	41.73	26.73
TraesCS4D01G132400.1	Wheat	cytosol	39.21	26.72
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	38.49	26.23
TraesCS5D01G143500.2	Wheat	nucleus	44.6	23.48
TraesCS5B01G148100.2	Wheat	nucleus	44.24	23.21
TraesCS5A01G149400.2	Wheat	mitochondrion	44.6	22.3
HORVU5Hr1G047100.5	Barley	nucleus	44.6	21.64
Bra007702.1-P	Field mustard	nucleus	22.66	19.09
Bra039103.1-P	Field mustard	nucleus	22.3	17.66
Bra025523.1-P	Field mustard	nucleus	21.94	16.71
Bra032962.1-P	Field mustard	nucleus	22.3	16.62
Bra035704.1-P	Field mustard	nucleus	24.82	15.94
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.46	15.81
Os12t0109900-02	Rice	cytosol	22.3	13.42

Protein Annotations

EnsemblPlants:Bra030793.1	EnsemblPlants:Bra030793.1-P	EnsemblPlantsGene:Bra030793	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	InterPro:DRB	InterPro:IPR014720	InterPro:dsRBD_dom
PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI00025465F5	UniProt:M4EPS2	MapMan:16.10.2.1.2	:	:

Description

AT1G09700 (E=4e-110) HYL1, DRB1 | HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding

Coordinates

chrA08:+:20347592..20349406

Molecular Weight (calculated)

30596.5 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.550

Length

278 amino acids

Sequence
(BLAST)

001: MTANEVPSGV SNCYVFKSRL QEYAQKYKLP TPIYETVKEG PSHKSLFQST VIVDGVRYDS LPGFFNRKAA EQSAAEVALQ ELSKSTELGQ CVSLPVHEMG
101: LCKNLLQEYA QKMNYAIPLY QCQKSETTGR APKFTCTVEI GGIKYTGAAT KTKREAEISA GRTALIAIQS ESKIDLANNH STQLTVLPCE KKTVEVASPV
201: KETIKTPKAR RAQFKRKAKK GKRKAAGTII PPEPTEHCQN DQQPENVEKT LNLEPSSCLN GFKEDSTFAS VETEANLA

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.