Factsheet for HORVU4Hr1G024480.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G020790.1
HORVU2Hr1G091030.9
HORVU4Hr1G024480.3
HORVU5Hr1G019300.8
HORVU5Hr1G047100.5
HORVU6Hr1G021620.2
HORVU6Hr1G060230.12
HORVU7Hr1G052570.1
HORVU7Hr1G097860.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	HORVU4Hr1G024480.3	AT1G09700.1	15821876
AT1G09700.1	HORVU5Hr1G047100.5	AT1G09700.1	15821876
AT1G09700.1	HORVU0Hr1G020790.1	AT2G27100.1	23141542
AT1G09700.1	HORVU6Hr1G021620.2	AT2G27100.1	23141542
AT1G09700.1	HORVU7Hr1G052570.1	AT2G27100.1	23141542
AT1G09700.1	HORVU7Hr1G097860.2	AT2G27100.1	23141542
AT1G09700.1	HORVU5Hr1G019300.8	AT3G03300.1	15821876
AT1G09700.1	HORVU2Hr1G091030.9	AT4G21670.1	23141542
AT1G09700.1	HORVU6Hr1G060230.12	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G180400.1	Wheat	cytosol	80.15	80.34
TraesCS4D01G132400.1	Wheat	cytosol	78.68	78.68
OQU82704	Sorghum	cytosol, nucleus	41.91	51.98
Os05t0307400-01	Rice	cytosol	52.94	49.43
Os11t0109900-01	Rice	cytosol	56.13	48.41
Zm00001d005065_P002	Maize	cytosol	46.32	43.55
KXG22802	Sorghum	mitochondrion	45.34	42.82
CDX93488	Canola	plastid	27.21	40.36
Bra019999.1-P	Field mustard	plastid	26.96	40.15
CDX94957	Canola	cytosol, nucleus, plastid	27.21	39.22
CDY20678	Canola	cytosol	26.47	38.99
Bra030793.1-P	Field mustard	cytosol	26.23	38.49
HORVU5Hr1G047100.5	Barley	nucleus	52.7	37.52
GSMUA_Achr11P...	Banana	nucleus	34.07	37.17
CDY31070	Canola	endoplasmic reticulum, golgi	26.47	33.64
KRH62246	Soybean	nucleus	28.68	32.59
KRH52961	Soybean	nucleus	28.68	32.23
VIT_18s0001g07670.t01	Wine grape	nucleus	30.64	31.25
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	26.47	30.0
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	28.92	29.06
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	29.41	27.71
AT1G09700.1	Thale cress	plastid	27.7	26.97
Os12t0109900-02	Rice	cytosol	16.91	14.94
HORVU5Hr1G076910.7	Barley	nucleus	14.95	14.63
HORVU1Hr1G041820.1	Barley	nucleus	18.38	14.23
HORVU1Hr1G021530.1	Barley	nucleus	18.87	13.28
HORVU3Hr1G075340.1	Barley	mitochondrion	14.22	10.16

Protein Annotations

EnsemblPlants:HORVU4Hr1G024480.3	EnsemblPlantsGene:HORVU4Hr1G024480	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	InterPro:DRB	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207
PANTHER:PTHR11207:SF1	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI000B4681E7	UniProt:A0A287NKH0	MapMan:16.10.2.1.2	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:139548304..139551054

Molecular Weight (calculated)

45151.2 Da

IEP (calculated)

9.506

GRAVY (calculated)

-0.611

Length

408 amino acids

Sequence
(BLAST)

001: APNTSGIRPV KCDAFKSWLQ EYAQKLGVTA PEYHTLKEGP CHEPIFKSAV VINGAKYDSM PGFFTRKAAE QSAAEVALME IVESIPIIGR IPAALQTGLC
101: KNLLQEYAQK MNYTPSYSLT RQASRIAPFT CTVGIGGIHY IGPATRSKKE AEIKAARTAL LAIRAGQLEG CGSGASKYIV VPSKRRVKET AKRPIEIPKS
201: LEVKKGGFKK KWNKRKFMKK NSQAVHVEKN EGRMAEDVIN PMSPCTQQST QELSSDYTIM LKDDEEARRA VQEPGGDAVK LQPSKEARRA EHDSDIAALQ
301: PYKEAGRVEL EPDTAMLIPV ELEGKAEHVQ GNDIVMLPPD HEVRRVKQVP GSDTAMLQRN NEARSIEQEL HGDSGMARSN KEAGTAMPRN FREARTMKHD
401: SQHRCSLM

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.