Factsheet for HORVU5Hr1G047100.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G020790.1
HORVU2Hr1G091030.9
HORVU4Hr1G024480.3
HORVU5Hr1G019300.8
HORVU5Hr1G047100.5
HORVU6Hr1G021620.2
HORVU6Hr1G060230.12
HORVU7Hr1G052570.1
HORVU7Hr1G097860.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	HORVU4Hr1G024480.3	AT1G09700.1	15821876
AT1G09700.1	HORVU5Hr1G047100.5	AT1G09700.1	15821876
AT1G09700.1	HORVU0Hr1G020790.1	AT2G27100.1	23141542
AT1G09700.1	HORVU6Hr1G021620.2	AT2G27100.1	23141542
AT1G09700.1	HORVU7Hr1G052570.1	AT2G27100.1	23141542
AT1G09700.1	HORVU7Hr1G097860.2	AT2G27100.1	23141542
AT1G09700.1	HORVU5Hr1G019300.8	AT3G03300.1	15821876
AT1G09700.1	HORVU2Hr1G091030.9	AT4G21670.1	23141542
AT1G09700.1	HORVU6Hr1G060230.12	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G149400.2	Wheat	mitochondrion	85.69	88.31
TraesCS5B01G148100.2	Wheat	nucleus	81.5	88.11
TraesCS5D01G143500.2	Wheat	nucleus	80.98	87.88
Os11t0109900-01	Rice	cytosol	47.29	57.29
Os05t0307400-01	Rice	cytosol	43.46	56.98
OQU82704	Sorghum	cytosol, nucleus	31.94	55.62
KXG22802	Sorghum	mitochondrion	39.97	53.01
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	37.52	52.7
Zm00001d005065_P002	Maize	cytosol	38.57	50.92
Bra019999.1-P	Field mustard	plastid	22.16	46.35
CDX93488	Canola	plastid	21.82	45.45
CDY20678	Canola	cytosol	21.82	45.13
Bra030793.1-P	Field mustard	cytosol	21.64	44.6
CDX94957	Canola	cytosol, nucleus, plastid	21.12	42.76
GSMUA_Achr11P...	Banana	nucleus	26.53	40.64
CDY31070	Canola	endoplasmic reticulum, golgi	21.82	38.94
KRH62246	Soybean	nucleus	24.26	38.72
KRH52961	Soybean	nucleus	24.43	38.57
VIT_18s0001g07670.t01	Wine grape	nucleus	26.53	38.0
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	22.16	35.28
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	23.73	33.5
AT1G09700.1	Thale cress	plastid	23.39	31.98
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	23.39	30.95
Os12t0109900-02	Rice	cytosol	15.18	18.83
HORVU1Hr1G021530.1	Barley	nucleus	14.83	14.66
HORVU1Hr1G041820.1	Barley	nucleus	12.39	13.47
HORVU5Hr1G076910.7	Barley	nucleus	9.42	12.95
HORVU3Hr1G075340.1	Barley	mitochondrion	12.22	12.26

Protein Annotations

EnsemblPlants:HORVU5Hr1G047100.5	EnsemblPlantsGene:HORVU5Hr1G047100	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	InterPro:DRB	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207
PANTHER:PTHR11207:SF1	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI000B48063D	UniProt:A0A287R2W6	MapMan:16.10.2.1.2	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:366108799..366112005

Molecular Weight (calculated)

61502.7 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.725

Length

573 amino acids

Sequence
(BLAST)

001: SAIHPGTTKP SSLILQSGGA VGMDGAGMAT PPEANTSPAP NGGGCGWIRV ENCYVFKSRL QEYVQKAGLM TPEYQTLKEG PSHAPIFSST VVINDVKYDS
101: LPGFFSRKAA EQSAAEVALM EIGKSMALPT NATIPAVQET GLCKNLLQEY AQKMNYAIPS YICNKQSPYI CTVEIGGIQY IGATAQTKKE AEIKAARTAL
201: LAIQVAGQSE GCANGTTKYI VVPGKRQGKD TEKKPVETPK SLKTKKGGFK KQRNKNKFIK KNGQEVNEGK DETGVPGDAH HSDVPMKPAV TTEDPSANTV
301: MMQPDEEAWS FEHEPASDTA MLQPDEDALP FEHEPSGNTA MLQPDGEATK VGQEHLSDTA MLQPDEDAWP FEHEPAGNTA MLQPDGEATK VGQEHLSDTA
401: MLQPDDEGRR GKQEPLIGTA MPQPHMEDRR VGAEPPRDAA MVQPNDEARC VKQELLIDTA MPLPNEEAGA GANPVPPSDS TTAQPNAETT NINGESLRNA
501: ASAQHNEEAR TLNQEPPSSA SLLQPKEPRV ENGEFVSENK DQTLGDASRE ANRSIEDMPE KSSNNSSAFT SAE

Best Arabidopsis Sequence Match ( AT1G09700.1 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.