Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019999.1-P | Field mustard | plastid | 89.05 | 91.97 |
| CDX93488 | Canola | plastid | 88.34 | 90.91 |
| CDY20678 | Canola | cytosol | 80.21 | 81.95 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 81.63 | 71.96 |
| AT1G09700.1 | Thale cress | plastid | 72.79 | 49.16 |
| KRH62246 | Soybean | nucleus | 52.65 | 41.5 |
| KRH52961 | Soybean | nucleus | 53.0 | 41.32 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 50.88 | 36.0 |
| OQU82704 | Sorghum | cytosol, nucleus | 39.93 | 34.35 |
| GSMUA_Achr11P... | Banana | nucleus | 44.17 | 33.42 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 45.23 | 31.53 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 45.23 | 29.56 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 37.46 | 29.44 |
| KXG22802 | Sorghum | mitochondrion | 42.76 | 28.01 |
| Os05t0307400-01 | Rice | cytosol | 43.11 | 27.92 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 39.22 | 27.21 |
| Zm00001d005065_P002 | Maize | cytosol | 41.7 | 27.19 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 38.16 | 26.54 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 38.16 | 26.47 |
| Os11t0109900-01 | Rice | cytosol | 43.82 | 26.22 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 42.4 | 22.73 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 42.05 | 22.45 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 42.4 | 21.58 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 42.76 | 21.12 |
| CDY11449 | Canola | nucleus | 22.97 | 19.64 |
| CDY00177 | Canola | nucleus | 24.38 | 19.6 |
| CDY12250 | Canola | nucleus | 23.67 | 19.09 |
| CDX76663 | Canola | cytosol | 22.26 | 18.81 |
| CDY48959 | Canola | nucleus | 23.32 | 18.08 |
| CDY46403 | Canola | nucleus | 23.67 | 17.77 |
| CDY28511 | Canola | nucleus | 23.67 | 17.77 |
| CDY34199 | Canola | nucleus | 23.32 | 17.69 |
| CDY30490 | Canola | nucleus | 26.5 | 17.28 |
| CDY04559 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.15 | 17.21 |
| CDY15737 | Canola | cytosol | 26.15 | 17.09 |
| CDX77176 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.15 | 17.09 |
| Os12t0109900-02 | Rice | cytosol | 20.85 | 12.77 |
Protein Annotations
| EnsemblPlants:CDX94957 | EnsemblPlantsGene:GSBRNA2T00100441001 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | InterPro:DRB | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | PFAM:PF00035 | PFscan:PS50137 | ProteinID:CDX94957 | ProteinID:CDX94957.1 | SEG:seg |
| SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0004EE1CD9 | MapMan:16.10.2.1.2 | : | : |
Description
BnaC05g07140D
Coordinates
chrLK031886:+:346016..347298
Molecular Weight (calculated)
31286.4 Da
IEP (calculated)
8.737
GRAVY (calculated)
-0.441
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFSPQFEAF SLSGVSNCYV FKSRLQEYAQ RYKLPTPLYE AIKEGPSHKP LFQSTVIVND VRYDSLPGFF NRKAAEQSAA EVALQELAKS SDLTQSVSLP
101: VHEMGLCKNL LQEYAQKMNY AIPLYQCQRS ETLGRAPQFT CTVEIGGIKY TGAATKTKKE AEISAGRTAL IAIQSESKID LANNYSSQLT KKTVEVASPV
201: KETIIKTPKA RRAQFKKKAR KGKLKVAKDL LEDSTVPPQP TEHCVNEQPE NAETMINMEP SSCMNGFKEA VVVASVETEA SQA
101: VHEMGLCKNL LQEYAQKMNY AIPLYQCQRS ETLGRAPQFT CTVEIGGIKY TGAATKTKKE AEISAGRTAL IAIQSESKID LANNYSSQLT KKTVEVASPV
201: KETIIKTPKA RRAQFKKKAR KGKLKVAKDL LEDSTVPPQP TEHCVNEQPE NAETMINMEP SSCMNGFKEA VVVASVETEA SQA
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.