CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039103.1-P	Field mustard	nucleus	98.01	98.01
CDY00177	Canola	nucleus	94.3	94.03
CDY34199	Canola	nucleus	82.05	77.21
CDY28511	Canola	nucleus	81.77	76.13
AT3G26932.2	Thale cress	nucleus	73.79	72.14
CDY48959	Canola	nucleus	55.27	53.15
CDY46403	Canola	nucleus	56.7	52.79
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	43.02	42.66
TraesCS5A01G290100.2	Wheat	nucleus	42.73	41.32
TraesCS5B01G289100.1	Wheat	nucleus	42.45	40.71
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	43.3	37.62
VIT_14s0068g01520.t01	Wine grape	nucleus	50.14	36.59
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	41.6	33.95
Os09t0508500-02	Rice	nucleus	39.03	33.91
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	41.6	33.72
CDY15737	Canola	cytosol	41.6	33.72
CDY30490	Canola	nucleus	41.6	33.64
CDY11449	Canola	nucleus	24.22	25.68
CDX76663	Canola	cytosol	24.22	25.37
CDX93488	Canola	plastid	19.09	24.36
CDX94957	Canola	cytosol, nucleus, plastid	19.09	23.67
CDY20678	Canola	cytosol	17.66	22.38
CDY31070	Canola	endoplasmic reticulum, golgi	17.66	19.31

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A078FD01	EnsemblPlants:CDY12250	ProteinID:CDY12250	ProteinID:CDY12250.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00061294001	InterPro:IPR014720
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI0004EEF594	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

BnaA09g24500DBnaA09g24500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD01]

Coordinates

chrLK032019:-:7545..9060

Molecular Weight (calculated)

39023.9 Da

IEP (calculated)

10.294

GRAVY (calculated)

-0.513

Length

351 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCTREGPDHA PRFKACVNFN VEIFESPTYC STLRQAEHSA AEVALIALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF IGESAKTKKQ AEKNAAIAAW FSLRRMPSLD SPVEKRGEGE KERDVVTRVL SRFRPKEVKR REQHHSRRRA
201: IRQETTITRE FLSEKLRLIN PYTNVPSSSS LKHHQTLPSR LNLQQQQSKV KSLLEKSQGH AGIISSSSME RTNCYSKLLP FPEMFAGGRG FQKLAPAVHI
301: RSVIPVCSAP PPKLSPSSAP SSLGSGDQEK KPLRLESNPC IKIVSLDQPM L

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.