Factsheet for Os11t0109900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0149600-01
Os02t0639000-01
Os03t0583900-01
Os04t0529500-02
Os05t0307400-01
Os06t0698859-01
Os08t0517300-01
Os09t0315050-00
Os09t0508500-02
Os11t0109900-01
Os12t0109900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	Os05t0307400-01	AT1G09700.1	15821876
AT1G09700.1	Os11t0109900-01	AT1G09700.1	15821876
AT1G09700.1	Os12t0109900-02	AT1G09700.1	15821876
AT1G09700.1	Os02t0149600-01	AT2G27100.1	23141542
AT1G09700.1	Os06t0698859-01	AT2G27100.1	23141542
AT1G09700.1	Os08t0517300-01	AT2G27100.1	23141542
AT1G09700.1	Os03t0583900-01	AT3G03300.1	15821876
AT1G09700.1	Os09t0315050-00	AT3G03300.1	15821876
AT1G09700.1	Os02t0639000-01	AT4G21670.1	23141542
AT1G09700.1	Os04t0529500-02	AT4G21670.1	23141542
AT1G09700.1	Os09t0508500-02	AT5G41070.1	15821876
AT1G09700.1	Os09t0508500-02	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0307400-01	Rice	cytosol	74.21	80.32
OQU82704	Sorghum	cytosol, nucleus	42.49	61.09
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	48.41	56.13
TraesCS4D01G132400.1	Wheat	cytosol	47.78	55.39
TraesCS4A01G180400.1	Wheat	cytosol	47.36	55.04
KXG22802	Sorghum	mitochondrion	48.63	53.24
Zm00001d005065_P002	Maize	cytosol	48.41	52.77
TraesCS5D01G143500.2	Wheat	nucleus	58.14	52.08
TraesCS5B01G148100.2	Wheat	nucleus	58.14	51.89
TraesCS5A01G149400.2	Wheat	mitochondrion	58.14	49.46
HORVU5Hr1G047100.5	Barley	nucleus	57.29	47.29
CDX93488	Canola	plastid	27.48	47.27
Bra019999.1-P	Field mustard	plastid	27.27	47.08
CDY20678	Canola	cytosol	27.27	46.57
Bra030793.1-P	Field mustard	cytosol	27.27	46.4
GSMUA_Achr11P...	Banana	nucleus	36.36	45.99
CDX94957	Canola	cytosol, nucleus, plastid	26.22	43.82
KRH62246	Soybean	nucleus	31.5	41.5
KRH52961	Soybean	nucleus	31.29	40.77
CDY31070	Canola	endoplasmic reticulum, golgi	27.27	40.19
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	29.81	39.17
VIT_18s0001g07670.t01	Wine grape	nucleus	31.5	37.25
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	28.54	33.25
AT1G09700.1	Thale cress	plastid	29.39	33.17
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	28.54	31.18
Os08t0384100-01	Rice	cytosol	17.12	25.96
Os12t0109900-02	Rice	cytosol	24.74	25.32
Os09t0508500-02	Rice	nucleus	13.11	15.35
Os10t0480500-01	Rice	cytosol, nucleus, plastid	16.07	14.79
Os01t0772000-01	Rice	mitochondrion, nucleus	13.32	14.29
Os05t0150400-01	Rice	cytosol, nucleus	15.64	12.27

Protein Annotations

MapMan:16.10.2.1.2	Gene3D:3.30.160.20	EntrezGene:4349575	ProteinID:ABG22335.1	EMBL:AK063961	EMBL:AK121852
ProteinID:BAF27402.1	ProteinID:BAT12358.1	InterPro:DRB	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030422
GO:GO:0031053	GO:GO:0031054	GO:GO:0040029	GO:GO:0090502	InterPro:IPR014720	EnsemblPlantsGene:Os11g0109900
EnsemblPlants:Os11t0109900-01	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	UniProt:Q0IV63
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0000D8997C	RefSeq:XP_015617485.1	InterPro:dsRBD_dom	SEG:seg

Description

DRB7Double-stranded RNA-binding-like domain containing protein. (Os11t0109900-01)

Coordinates

chr11:-:457195..461678

Molecular Weight (calculated)

51205.4 Da

IEP (calculated)

4.733

GRAVY (calculated)

-0.586

Length

473 amino acids

Sequence
(BLAST)

001: MDMPPTPLPP ETANTSPAPN GATAGIRVEN CYVFKSRLQE YAQKAGLQTP EYHTFKEGPS HEPVFKSTVV INNTSYDSLP GFFNRKAAEQ SAAEVALMEI
101: VKSIPANANI PAVQETGLCK NLLQEYAQKM NYAIPSYICT KSASGLAPFI CTVEIGGIQY IGAAARTKKD AEIKAARTAL LAIQGQSEGS ANGATKYIVV
201: PGKRVGKEVE KMPIETPKPL KIKKGGFKKK WNKRKFMKKD GQAVVEKDEA RVAGDAHDSD VLMQPTVITQ EASCGTLFLQ PCEEAKRVEA EPPRDIEMVQ
301: PDKENQHSDA ALVQPDDEAR VEQEPSRDIS VVPPNEEAIS VKQEPSIDAA ILQPKEEASS VKQEPFIDTA MLQACKEAGS VELGPARDTV ISQLNEQDRG
401: VKQEPAGDTA VPQPDVDARV VKEESPRTEP NGEATNMKET PKNSAVCNSP ETKEFGDITA MGSDPPATNM SEE

Best Arabidopsis Sequence Match ( AT1G09700.1 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.